Carettochelys insculpta (pitted-shelled turtle): 142014630
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Entry
142014630 CDS
T11194
Symbol
TRAF6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz04010
MAPK signaling pathway
ciz04120
Ubiquitin mediated proteolysis
ciz04140
Autophagy - animal
ciz04144
Endocytosis
ciz04517
IgSF CAM signaling
ciz04620
Toll-like receptor signaling pathway
ciz04621
NOD-like receptor signaling pathway
ciz04622
RIG-I-like receptor signaling pathway
ciz05132
Salmonella infection
ciz05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
142014630 (TRAF6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
142014630 (TRAF6)
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
142014630 (TRAF6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
142014630 (TRAF6)
04140 Autophagy - animal
142014630 (TRAF6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
142014630 (TRAF6)
04621 NOD-like receptor signaling pathway
142014630 (TRAF6)
04622 RIG-I-like receptor signaling pathway
142014630 (TRAF6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
142014630 (TRAF6)
09171 Infectious disease: bacterial
05132 Salmonella infection
142014630 (TRAF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ciz04131
]
142014630 (TRAF6)
04121 Ubiquitin system [BR:
ciz04121
]
142014630 (TRAF6)
Enzymes [BR:
ciz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
142014630 (TRAF6)
Membrane trafficking [BR:
ciz04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
142014630 (TRAF6)
Ubiquitin system [BR:
ciz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
142014630 (TRAF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF6_Z2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-TRAF_2
Med21
zf-RING_5
DUF4455
SlyX
RING_XB3-XBAT31
TRAF3_RING
CCDC18_1st
CCDC122
DUF16
Sina_ZnF
PspA_IM30
zf-Di19
CCDC39
zf-RING_11
ATG16
U-box
HMMR_N
DM
STX17_N
DUF8221
DUF1664
TMF_DNA_bd
CENP-Q
Spc29
CEP104_ZnF
DUF7310
DUF4200
Ataxin_7
DUF948
DUF7607
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
142014630
NCBI-ProteinID:
XP_074853609
LinkDB
All DBs
Position
6:complement(83898376..83946877)
Genome browser
AA seq
576 aa
AA seq
DB search
MGGVRGAWVRSWQEGEGAFGCLLNVQLVTMSLLQSDNSYRSRDLETGCCAAMASACSAGA
KEDSLSVSVNSGTGNLPNSFTEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRF
CKGCIVKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLKVRCPNKGCLHKMELRHLE
EHQLHCDFSSVECPQCQGSFQKNQLQNHITLECPRRQVSCPNCATSMAYEDKELHDQSCP
LANVFCEYCNTVLIREQMPNHYDNDCPTAPVPCTYSAFGCPEKMERNELARHMQEFTQVH
MRMMAQTLRSISVTAATSIPFLSGVSFEQSLFSRVPPSPYECSPEVENFKETIQQLEGRL
VRQDHQIRELIAKMETQSAHVADLKRTIQNLEEKITEMEAQQCNGIYIWKIENFSTHLRS
QEEERPVVIHSPGFYTGKPGYKLCLRLHIQLPNSQRCANFISLFVHTMQGDYDSYLSWPF
QGTIRLSILDQSEGLTRQNHEEVMEAKPELLAFQRPTVPRNPKGFGYVTFMHLQALKQRT
YVKDDILLVRCEVVTRLDLNSVRREGFQPRSTDGAL
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggggggcgtccgaggcgcttgggtccggagttggcaggagggcgagggagccttcggg
tgcctgctgaatgttcagctagttactatgagcttgctacaaagtgacaacagctacaga
tccagagatctggagactggctgctgtgcagccatggccagtgcatgcagtgctggagct
aaggaagacagtttaagtgtttctgtcaacagtgggactggaaatcttccaaactctttt
acggaagagattcaaggatatgacgtagagtttgatccccccctggagagtaaatatgaa
tgtcccatctgtttgatggctctacgggaggcagtgcagacgccgtgtggacaccggttt
tgcaaaggctgtattgtcaaatcaataagagatgcaggtcacaaatgtccagtagacaat
gaaattctacttgaaaaccaactattccctgacaactttgccaaacgggaaatcctttca
ctgaaggtgagatgccccaacaagggctgtcttcacaagatggagctgagacatctagag
gaacatcagctgcactgtgacttctcttctgtggaatgcccacaatgccagggctccttc
cagaagaaccagcttcaaaaccacataacgctggaatgcccacggcggcaagtctcttgt
ccaaattgtgccacatctatggcttatgaagataaagagcttcatgaccagagctgtcca
cttgcaaatgtgttttgtgaatactgcaatacagtgctcatcagagaacagatgcctaat
cattatgataacgactgccctactgccccagtgccatgtacatacagtgcctttggatgt
cctgaaaagatggagagaaatgagttggcacgtcatatgcaagaattcacacaagttcac
atgagaatgatggctcagactctccggagtattagtgttactgctgcaacttccattccc
ttcctaagtggtgtatcctttgagcagtctcttttctcacgtgtcccaccttccccatat
gagtgcagcccagaagttgagaacttcaaggaaacaattcagcaattggaaggtcgcctg
gtaaggcaagatcaccaaatcagagagcttattgctaaaatggagactcagagtgctcat
gtggcagacctcaaacgcactattcaaaatctagaggaaaaaattactgaaatggaggct
cagcaatgtaatggcatttacatctggaagattgagaacttcagcacgcatttgagatcc
caagaagaagagagacctgttgttatccacagtcctggcttctacactgggaaaccaggc
tacaaactgtgtttgcgtctgcatatccagttaccaaattctcaacgttgtgccaacttt
atatccctctttgtccatactatgcaaggagattatgacagttatctgtcttggccattc
cagggcacgatacgactttctattttggatcaatcagaagggcttacaaggcagaatcat
gaagaagtgatggaagccaaacctgagcttctagccttccaaagaccaacagtcccccgc
aacccaaaagggtttggttatgtgacattcatgcacctgcaggccttgaagcaaagaacc
tatgtaaaagatgatattcttctggttcgctgtgaggtggtaacccgtttagacttgaat
agtgtacggagagaaggctttcaacctcgcagtactgatggggctttatag
DBGET
integrated database retrieval system
