KEGG   Carettochelys insculpta (pitted-shelled turtle): 142021338
Entry
142021338         CDS       T11194                                 
Symbol
AFF4
Name
(RefSeq) AF4/FMR2 family member 4
  KO
K15185  AF4/FMR2 family member 4
Organism
ciz  Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:ciz00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    142021338 (AFF4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ciz03021]
    142021338 (AFF4)
Transcription machinery [BR:ciz03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     142021338 (AFF4)
SSDB
Motif
Pfam: AF-4 AFF4_CHD AF4_int
Other DBs
NCBI-GeneID: 142021338
NCBI-ProteinID: XP_074866125
LinkDB
Position
15:22367499..22461189
AA seq 1165 aa
MNREDRNVLRMKERERRNQEIQQGEEVFPPNSPLFAEPYKVTSKEDKLSNRIQSMLGNYD
EMKDLIGDRSLQKLVGIPKPTVPSTPDEKSNQSFFGEQRHSTSSHQSSKWTPVGPAPSTS
SQSQKRSSGLQTGHSSQRSSGNNTSSGGQRHDRDSYGGSSSGRKKSQHGSEHSKSRSSSP
GKPPAVSSLSSSHSRSHGSDHHSKEHQRSKSPRDPDASWDSPSRVPSFSSGQHSNQSFPP
SLMSKSSSMLQKPTAYVRPMDGQESMEPKLSSEHYSSQTHSHSMSELKSSSKAHLTKLKI
PSQPLDASASGDVTCVDEILKEMTRSWPPPLTAIHTPCKTEPSKFPFPTKESQQPTFGTG
EQKRYNPSSKTSNGHQSKSSESNQTDMLKDDLKLSSSEDSEGEQDSDKIVPRSTPGSNSE
PSQHNSEGADNSRDDSSSHSGSESSSGSDSESESSSSDSEANEPSQSASPEPEPPPTNKW
QLDNWLNKVNPHKVSPASSVDSNIPSSQGYKKDGRDQSTGNGYTDQSGSKESISSTPGRD
SKTTQKGSESSRGRQKSPAQSDSTIQRRTVGKKQPKKADKAATEEPRGGLKIESETPVDM
ATTMPSNRHKAATKGSRKPNIKKEPKSSPRPTAEKKKYKASSKPSQKSREFIETDTSSSD
SDENESLPPSSQTPKYSESNRTPVKSSMEEEDSFFRHRMFSPMEEKELLSPLSDPDERYP
LIVKIDLSLLSRIPGKPYKDTDPPKVEKKSVPEKHTRESQKPASDKNSTKGKRKHKNDDE
NRAGESKKTKVEEKSSSGHKTSSNRESSKQSAGKEKDLLPSPVAPVLQKDPKQEHGSRKR
TVSQSSSLKSSSSSNKESSSKSNSSSKQKKTEGKASSSAKEVKEKVLNSSSNCPPASTPT
TDSSKSRRAKLVFDDRTYSADHYLQEAKKLKHNADALSDRFEKAVYYLDAVVSFIECGNA
LEKNAQESKSPFPMYSETVELIKYTMKLKNYVASDATAADKRLAVLCLRCQSLLYLRLFK
LKKESALKYSKTLTEHLKNSYNNSQAPSPGMGSKPVGMPSPVSPKLSPGNSGNYSSGATN
PSGSSSSVTIPQRIHQMAASYVQVTSNFLCATEIWDQAEQLSKEQKEFFAELDKVMGPLI
FNSSIMTDLVRYTRQGLHWLRLDAK
NT seq 3498 nt   +upstreamnt  +downstreamnt
atgaaccgtgaagaccggaatgtgctgcgtatgaaagaaagggaaagacgaaatcaagaa
attcaacagggcgaagaagtctttccacctaactctcctctctttgctgaaccatataaa
gttactagcaaagaagataaactgtctaaccgtattcagagcatgcttggaaattatgat
gaaatgaaggatctgataggtgacagatctctacaaaagcttgttggtattcccaaacca
acagtaccatcaacaccagatgaaaaatcaaaccaaagtttctttggtgaacagagacac
agtaccagctctcatcagagcagcaaatggactcctgtaggaccagcacctagcacttcc
tcccaatcacagaaacggtcctcaggtttacaaacaggacacagtagtcagcggagcagt
ggcaataacactagcagcggtggccagaggcatgaccgtgactcatatgggggtagcagc
agcgggcgcaaaaaaagccagcatgggtctgaacactccaaatcccgttcttccagccct
ggaaaaccacctgctgtttcttcattaagctccagccattccaggtctcatggaagtgat
catcatagcaaggaacatcagcgttcaaaatctcctcgggatcctgatgccagctgggat
tcaccttcccgcgtaccttcattttcaagtggacaacactctaaccagtcttttcctcct
tcgctaatgtccaagtccagttcaatgttgcagaagcctactgcctatgtaaggcccatg
gatggacaggagtccatggaaccaaagttgtcctctgaacactacagtagtcaaactcac
agccacagcatgagtgagctgaagtctagcagcaaagcacatctaaccaagcttaaaata
ccttctcaaccactagacgcatcagcatctggtgatgtgacctgtgtggatgaaattcta
aaagagatgacgcgctcttggccgcctcctcttacggctattcacacaccgtgcaaaaca
gaaccgtcaaaatttccttttccaactaaggagtctcaacagcccacttttggtaccgga
gagcagaaaagatataatccctcatcaaaaacctccaatggtcatcaatccaaatcatct
gaatcaaaccaaactgatatgttaaaagatgacttaaaactcagcagcagtgaagacagt
gaaggcgaacaggattctgataagatagtgcccagaagtacacctggaagcaattctgaa
ccatcgcagcataacagtgaaggagcagataattccagggatgactcaagcagccatagt
ggatctgaaagcagttctggatcagactctgaaagtgaaagtagttccagtgacagtgag
gctaatgagccttcccagagtgcttctccagagcctgagccaccaccaacaaacaaatgg
caacttgacaactggttgaacaaagtgaatccacataaagtgtcaccagcctcttctgtg
gacagtaatatcccatcttcacaaggttacaaaaaagatggccgagatcagagcacaggg
aatgggtatacggatcaaagtgggtctaaggaatccatttcctccactcctgggcgagat
tccaaaaccacccaaaaaggctcggagagtagtcgcggcaggcagaagtcacctgcccag
agtgatagcacaatacagaggaggacagttggtaaaaaacagcccaagaaggcagacaag
gcagctactgaagagcccagaggaggacttaaaatagaaagtgaaaccccagtggacatg
gcaacaactatgccctcaaatcggcataaggcagccacaaagggctctagaaaacccaac
ataaagaaggagcccaaatcttctcctcggcctacagcagagaaaaagaaatataaggcc
tcaagcaaaccttcccagaaatccagggaattcatagaaacagatacctcatcctctgat
tctgatgaaaatgagagcctgcctccttcgtcacaaactcccaaatattctgagagcaat
aggactcctgttaaatcttccatggaggaggaggacagcttttttcggcacagaatgttc
tctcctatggaagagaaggaacttctttcaccactcagtgatccagatgaaaggtaccca
cttattgtgaagattgacctgagcctcttatcaagaataccagggaagccttacaaggac
acagacccacccaaagtggagaagaaaagcgtgccagagaagcatacccgagaatcccaa
aaaccagcctcagacaaaaattccaccaagggcaaaagaaagcataagaatgatgatgaa
aacagagctggtgaaagcaagaaaactaaagtggaagaaaaatcttcatcaggccacaag
acatccagcaatagagagtcttcaaagcaaagtgcaggtaaagagaaggatctgctccct
tctccggtggccccagtccttcagaaagatccaaagcaagagcatggatcccggaagaga
acagtcagtcaatcttcttccttaaaatcaagcagcagcagtaataaggagagtagcagc
aaaagtaactcctcttccaaacaaaaaaagacagaagggaaggcttctagcagtgccaag
gaagtcaaggaaaaggttctaaacagttcttcaaactgtcctcctgcatctactccaact
acagacagctccaagtcccgaagagcaaagcttgtttttgatgacaggacatactctgct
gatcattatttacaagaagcaaaaaagttaaagcataatgcagatgccttgtctgacagg
tttgagaaagctgtttattaccttgatgctgtagtgtctttcatcgaatgtgggaatgcg
ttggagaaaaatgctcaggaatccaagtccccgttccctatgtattcagaaactgtggaa
ttaatcaagtacactatgaaactgaaaaattacgtggcatcggatgctacggctgcagat
aaaaggctagcagtgctgtgtcttcgatgccagtccctgttgtatctaaggcttttcaag
ctgaagaaggagagtgcattgaaatactctaaaacactgacagaacatctaaagaattcc
tataataattctcaagccccatcacctggcatgggaagcaaacctgttggtatgccatct
ccggtctctccgaagctgtctccaggaaattcagggaattactcttcgggggcaaccaac
ccttcagggagcagttcttctgtgactattccacagagaatccaccagatggcagccagc
tatgtgcaggttacatccaattttctgtgtgccactgaaatttgggaccaagctgaacag
ctgtctaaagagcaaaaagagttctttgctgaactggataaagttatgggccccctgatc
ttcaattcaagcatcatgacagatctagtacgttacacccgacagggattacattggttg
cgtctggatgctaagtga

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