Cellvibrio japonicus: CJA_1909
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Entry
CJA_1909 CDS
T00721
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cja
Cellvibrio japonicus
Pathway
cja03030
DNA replication
cja03410
Base excision repair
cja03420
Nucleotide excision repair
cja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CJA_1909 (ligA)
03410 Base excision repair
CJA_1909 (ligA)
03420 Nucleotide excision repair
CJA_1909 (ligA)
03430 Mismatch repair
CJA_1909 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cja03032
]
CJA_1909 (ligA)
03400 DNA repair and recombination proteins [BR:
cja03400
]
CJA_1909 (ligA)
Enzymes [BR:
cja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CJA_1909 (ligA)
DNA replication proteins [BR:
cja03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CJA_1909 (ligA)
DNA repair and recombination proteins [BR:
cja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CJA_1909 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CJA_1909 (ligA)
MMR (mismatch excision repair)
DNA ligase
CJA_1909 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CJA_1909 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
Zn_ribbon_NUD
RNA_pol_A_CTD
DZR_2
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ACE85035
UniProt:
B3PGQ8
LinkDB
All DBs
Position
complement(2223093..2225135)
Genome browser
AA seq
680 aa
AA seq
DB search
MSNLSLFDDVSAEIAQLREQIRYHNYRYYALDEPQIPDAEYDRLMQRLRELEAQYPASVT
PDSPTQRVGAAPLSAFQTVEHQIPMLSLDNAFEEADVIAFNQRILDRLKSTENIEYACEL
KLDGLAVSLLYRDGVLVRGATRGDGSKGEDITQNLRTIASVPLKLLGEGYPAVLEVRGEV
YMPKAGFNALNEKARSTGEKLFVNPRNAAAGALRQLDSRITASRPLEMCAYSVGLVEGGE
LPGTHTGILAALKSWGFLTNKETATASTIADCIAFYQSIQARRDSLAYDIDGIVFKVNAR
ELQESLGFISRAPRWAIAYKFPAQEEMTVLQDVEFQVGRTGAVTPVARLQPVFVGGVTVS
NATLHNRDEIQRLGIMIGDTVIVRRAGDVIPQIVQVVESRRPTDARPVLFPDHCPVCGSP
VETLEDEAIARCSGGLVCAAQRKEAIKHFASRKALDVEGLGDKLVEQLVDTGLVSKLADI
YQLTGEQLAAMERMGEKSADNLLQALEASKHTTLAKFIYALGIREIGEATARNLANHFGS
LEKLAEADEETLVQVNDVGPVGAHFVAEFFAQESNRQAVADLRAAGIHWQDLDVSTIEDL
PLKGLTYVLTGTLEVMSRDDAKAHLLALGAKVAGSVSAKTDYVVAGPGAGSKLQKARELN
LNVMDEEALLDLLRKHGRLE
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacctttccctgtttgatgatgtttccgctgaaattgcgcaattgcgcgagcag
attcgttatcacaattatcgctactacgcgctggatgagccgcaaatccccgatgcggaa
tacgatcgcttaatgcagcgtttgcgcgaactggaagcgcaatatcccgcctcagttacc
cctgactcccccacccagcgtgttggtgcagcgccattaagtgcatttcagaccgttgag
caccaaatccccatgttatccctggacaacgcatttgaggaggccgatgtcatcgcgttt
aaccagcggattctggatcgccttaaatccactgaaaacatcgaatatgcctgcgagcta
aagttggatggcctggcggttagcctgttgtaccgcgacggagttttagtgcgtggggcg
acccgtggcgatggcagtaaaggcgaggatattacccagaacctgcgcaccattgcatcg
gtgcccttaaagttattgggggagggatacccggccgtgctggaagtgcgcggcgaagtc
tatatgcccaaggctggttttaatgcgctcaatgaaaaagccaggagtaccggtgaaaaa
ttatttgtgaatccacgcaatgccgctgcaggtgcacttcggcaattggattcacgcatt
actgccagtcgaccgctggaaatgtgtgcttatagtgttggcttggtcgagggcggtgaa
ttgccaggtacacacacgggtattttggcagcactgaaatcctgggggtttttaaccaac
aaggaaactgctacggcaagcacgattgcagattgcattgcattttatcaatccatccag
gcccggcgcgacagccttgcttatgatattgacggcatcgtctttaaagttaacgcgcgt
gagttacaggagagcctgggatttatttcccgcgccccgcgttgggcaattgcctataaa
ttccccgcccaggaggaaatgaccgtcctccaggatgtggagtttcaggtaggacgtacc
ggtgcagtgacaccggtagcgcgtttacagcccgtgtttgtcggtggtgttactgtctcc
aatgccaccttgcataatcgtgatgaaatccagcgcctggggatcatgatcggcgatacc
gttattgtcaggcgtgccggggatgtaattccacagattgtgcaggtggttgaatcacgt
cgccccacagacgcccgtccggttttatttcccgaccattgtccggtgtgtggctcgccg
gtagaaacccttgaagatgaagctattgcacgctgttccggtgggctggtgtgcgccgcc
cagcgcaaagaggccatcaagcattttgcttcacgcaaagcactggatgtggaggggctg
ggggacaagctggttgagcagttagtggatactggactggtttcaaagctcgctgatatt
tatcagctgactggtgagcaattggctgcaatggaacgcatgggggaaaagtcagcggat
aacctgttacaagcgctggaagcatccaagcataccaccctggcaaaattcatttatgcc
ttgggcatccgcgagattggtgaagcgacagcacgcaacctggctaatcatttcggcagt
ctggaaaagttggcagaagctgatgaggaaaccctggtccaggttaacgatgtaggtcca
gtgggggctcattttgttgctgagttttttgcgcaggagtccaatcgccaggctgtggcc
gatttacgcgcggcgggtatccactggcaagacctggatgtttctaccatcgaggattta
ccgctcaagggtttaacctatgtgttgaccggaaccttggaggttatgtcgcgtgatgac
gccaaggcgcatctattggccctgggggcaaaggtcgccggcagcgtttctgccaagacc
gattatgtagttgccgggccaggtgcgggatcaaaattgcaaaaagcccgggagttaaat
ctgaatgttatggatgaagaggccttactcgatcttttgcgcaaacatgggcgattggaa
tga
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