Caldichromatium japonicum: GWK36_08340
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Entry
GWK36_08340 CDS
T07151
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cjap
Caldichromatium japonicum
Pathway
cjap03030
DNA replication
cjap03410
Base excision repair
cjap03420
Nucleotide excision repair
cjap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cjap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GWK36_08340 (ligA)
03410 Base excision repair
GWK36_08340 (ligA)
03420 Nucleotide excision repair
GWK36_08340 (ligA)
03430 Mismatch repair
GWK36_08340 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cjap03032
]
GWK36_08340 (ligA)
03400 DNA repair and recombination proteins [BR:
cjap03400
]
GWK36_08340 (ligA)
Enzymes [BR:
cjap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GWK36_08340 (ligA)
DNA replication proteins [BR:
cjap03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GWK36_08340 (ligA)
DNA repair and recombination proteins [BR:
cjap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GWK36_08340 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GWK36_08340 (ligA)
MMR (mismatch excision repair)
DNA ligase
GWK36_08340 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GWK36_08340 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QIK37994
UniProt:
A0A6G7VDE7
LinkDB
All DBs
Position
complement(1702860..1704878)
Genome browser
AA seq
672 aa
AA seq
DB search
MTRDEALQRIEALRAEIRYHDHRYYVLDDPEVTDAEYDQLIAELKALESAYPDLVTADSP
TQRVGGEPRPELATVRHSVPMLSLDNAMDDLALAEFDRRIRAAFPELGPVPYTAEPKLDG
LAVSLRYERGTLTLAATRGDGTLGEDVTHNARTIPSVLLRLLGTDWPEVLEVRGEVYMTR
SGFEHLNRALARRGERTFANPRNAAAGSLRQLDPRIVAQRPLRFCAYGWGELSVDPGISQ
FAMLQRLAAWGLPISPELRLVEGLEGCRAYFAELGSRREGLDYDIDGVVFKLDRIDLQQA
LGTTSHHPRWAIARKFPAQEALTVVEAIEFQVGRTGAITPVANLRPVQVAGATVSRASLH
NFDELRRKDVRVGDTVIVRRAGEVIPEIVRVLAEHRPLGSKPVEPPTHCPVCGAEVLRPE
GEVIARCSAGLWCPAQRKETIRHFASRRALDIQGLGERLIDRLVDLGWVREPADLYTLQQ
AQLAELERMGDKSAANLISAIERSKETTLARLIYALGIREVGETTARLLAERFPDLEELM
VADEESLMQVEGIGPVVAAQIRGFMVEPHNRAAIAHLITAGVRWPRQGPSVGSTSLPLAG
KTFVITGTLSKPRELIKARLESLGARVSDGVSRQTDYLIVGANPGSKLAKAQALGVAVLD
EAGFASLIEDFI
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtgacccgcgacgaggccctccagcggatcgaggcattgcgcgccgagatccgttatcac
gatcatcgctattatgtccttgacgatccggaggtcacggacgctgagtatgaccagctg
atcgctgagctcaaggccctggaatcggcctatcccgatttggtgactgcagactcgccg
acccagcgggtcggaggtgagccgcgtcctgagcttgcgacggtgcgccacagcgtgccg
atgctttcgctcgacaacgccatggatgacctggcgcttgccgagttcgatcgccgcatc
cgcgccgctttccccgagcttgggccggtgccctataccgctgagcccaagctcgacggc
ttggcagtgagcctgcggtacgaacgagggacacttaccttggccgccactcgcggcgat
gggaccttgggcgaggatgtgacccacaatgcgcgcaccatccctagtgtcctcctgcgc
ttgttggggaccgattggccggaggtcctcgaggtacgcggcgaggtctatatgacgcgc
tcaggctttgagcacctcaatcgcgcgctggccaggcgcggtgagcgtaccttcgccaat
ccgcgcaatgccgccgccggcagcctgcgccagctcgatcctcgaatcgtcgcccaacgc
ccgttgcgtttttgtgcctatggctggggcgagctgtctgttgatccaggtatcagccag
tttgccatgttgcagcgtctggcggcctggggcctgccgatctcacccgagctgcggttg
gttgagggcttggagggctgtcgagcctattttgccgaactcggcagccgacgcgagggt
ctggattacgacatcgacggggtggtcttcaagcttgaccggatcgatctccagcaggcg
ctcggcaccaccagccatcacccgcgctgggcgatcgcgcgcaagtttcccgcgcaagaa
gccttgacggtggtcgaagcgatcgagtttcaggtcgggcgcaccggggccatcaccccg
gtagccaatttgcgaccagtccaggtggctggggcgacggtgtcgcgcgccagtctccat
aactttgatgagctcaggcgcaaggatgtgcgggtgggggatacggtgattgtgcggcgg
gccggcgaggtcatccccgagatcgtgcgtgtgctcgccgaacatcgccctctagggtcc
aagccggtcgagccacccacccactgccccgtctgcggcgccgaggtcctaaggcccgaa
ggcgaggtcatcgcccgctgtagcgctggcctctggtgccccgcccaacgcaaggagacc
atccggcactttgcctcgcgccgcgccctggacatccaggggctgggtgagaggctcatc
gaccgcctggtcgatctcggttgggtgcgcgaacctgcggatctctataccctccagcaa
gcacagctggctgaacttgagcggatgggcgataaatctgcagccaatctcatctcggcc
attgaacgcagtaaggagacaaccctcgcgcgtttgatctatgccctcggtatccgcgag
gtcggcgagaccacggcacggctcctcgccgaacgctttccagatctcgaggagctgatg
gttgccgatgaagagagcctgatgcaggtcgagggtatcggtcctgtggtcgccgcccag
atccgcgggtttatggttgaacctcataaccgggcggcgatcgcccatctcatcactgcc
ggcgtccgctggcctaggcaaggcccatcggtgggatccacatccttgcccctcgccggc
aagacctttgtcatcaccgggacactcagcaaaccgcgcgagctgatcaaggcacggctc
gagtccctcggcgcgcgggtgagcgacggcgtctcgcgtcagaccgattatctgatcgtc
ggcgccaaccccggctcaaagctcgccaaggcccaggcacttggggtagccgtcctcgat
gaagccgggtttgcatccttgatcgaggactttatctga
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