Callithrix jacchus (white-tufted-ear marmoset): 100386581
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Entry
100386581 CDS
T03264
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cjc03036
]
100386581 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
cjc03400
]
100386581 (SMCHD1)
Chromosome and associated proteins [BR:
cjc03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
100386581 (SMCHD1)
DNA repair and recombination proteins [BR:
cjc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
100386581 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
100386581
NCBI-ProteinID:
XP_035126570
UniProt:
A0A8J8YQT2
LinkDB
All DBs
Position
13:complement(55836064..55995148)
Genome browser
AA seq
2005 aa
AA seq
DB search
MAAADGGGPGGASVGTVEDGGGVGHRTVYLFDRREKESELGDRPLQVGERSDYVGFRATV
CQTLGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPH
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGVRRIQIKLLFDETQGKPAV
AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITN
DDERFLHHLIIEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGN
EIQTSKEVGPFNNIDIEISMFEKGKAPKIVNLREIQDDMQTLYINTAADSFEFKAHVEGD
GVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRL
IPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGTITRPDLPSKKQGPWATYA
AIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE
VKTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKME
NIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGLP
FNIPLEFQDEFGHTSQLVTDIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGK
NYNLKVILPGLKEDSQILKIRLLPGHPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNI
TAQPKLIVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKARIEIPSCKD
VAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMHNLIFQMYDEGERE
INITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFT
VRPLPDEPKHLKCELKGGKTVQMGQELQGEVVIIITDQYGNQIQAFSPSSLSALSVAGVG
LDSSNLKTTFQENTQSISVRGIRFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLL
DWPELKEFIPVINGRDLQNPIIVQLCDQWDNPAPVPHVKISLTKASNLKLMPSNQQHKTD
EKGRANLGVFSVFAPRGEHTVQVKAIYNKSIIEGPVIKLMILPDPEKPVRLNVKYDKDAS
FLAGGLFTDFMISVISEDDSIIKNINPARISMKMWKLSTSGNRPPANAETFSCNKIKDND
KEDGCFYFRDKVIPNKVGAYCIQFGFMMDKTNILNSEQIIVDVLPNQPVKLVPKIKPPTP
AVSNVRSVASRTLVRDLHLSITDDYNNHTGIDLVGTIVATIKGSNEEDTDTPLFIGKVRT
LEFPFVNGSAEITSLVLAESSPGRDSTEYFIIFEPQLPLLSRTLEPYILPFMFYNDVKKQ
QQMAALTKEKDQLSQSIIMYKSLFEAGQQLLNEMKCQVEEARLKEAQLRNELKIHNIDIP
TTQQVPHIETLLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMV
ISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRSLPHFRNGKLY
FKPIGDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLL
TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRSAVCKLD
SVNKDFNSQLEYLHTPDMKKKKQELDEHEKNLKLIEEKLGMTPIRKCNDSLRQSPKVEMT
DCPIPPKRMRREVTRQNRIITKTDV
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggacggcggcgggcccggcggggcctctgtggggacagtggaggatggc
ggaggcgtcggccacagaacggtgtacttgtttgaccggcgcgaaaaggagtctgagctc
ggggaccggcctctgcaggtgggggagcgctcggactacgtgggattccgcgccactgtg
tgtcagacacttggcatttcacctgaagaaaaatttgttattacaacaacaagtaggaaa
gaaattacctgtgataattttgatgaaactgttaaagatggagtcaccttatacctgctg
cagtcagtcaatcagttactactgacagctacaaaagaacgaattgacttcttacctcac
tatgacacactggttaaaagtggcatgtatgaatattatgcaagtgaagggcagaatcct
ttgccatttgctcttgcggaattaattgacaattcattgtctgctacttctcgtaacact
ggtgttagaagaatacagatcaaattgctttttgatgaaacacaaggaaaacctgctgtt
gcagtgatagataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtat
aggttatcaaaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgt
ccagtaccagtgccacgcagtttaaatagtgatatttcctactttggtgttgggggcaag
caagctgtcttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaa
gatgttcatgagcttgtactttctaaagaagattttgagaagaaggagaaaaataaagag
gcaatatatagtggatatattagaaacagaaagccctctgattctgttcacattacaaat
gatgatgaaagatttctacatcatcttatcatagaggagaaggaaaaagatagctttact
gctgtggttatcacaggggtacaaccagaacatatacagtacttgaaaaattatttccat
ctttggacacgacagttagcgcatatttatcattactatattcatggcccaaaaggaaat
gaaatacaaacatcaaaagaagttggacctttcaacaacattgatattgaaatttctatg
tttgaaaaagggaaggcacctaagattgtcaacctaagggaaatacaagatgacatgcag
acgttatatataaacacagcagctgatagttttgagttcaaggctcatgttgaaggagac
ggtgtagtggaaggaattatccgttatcatccattcttatatgatagagaaacttaccct
gacgatccatgctttccatcaaaattaaaagatgaagatgatgatgatgattgtttcata
cttgagaaagcagctagagggaaaaggcctatttttgaatgtttttggaatggacgatta
ataccatatacatcagttgaagactttgactggtgtactcctcctaagaagagagggctt
gcaccaattgaatgctacaatagaatatctggtgcattattcactaatgacaaattccag
gtcagcacaaataaactgacgtttatggatcttgagctaaaattgaaagataagaacact
ctttttacaaggattttaaatggacaggaacaacgaatgaaaattgacagagaatttgct
ttatggctgaaggactgtcatgaaaagtatgataaacaaataaaatttacactatttaag
ggaacaattacacgtcctgatcttccttctaaaaagcaaggtccctgggcaacatatgca
gcaatagaatgggatggaaagatatacaaagcaggacagctggtcaagacaatcaagaca
cttcccctcttttatggaagcatagtaagattttttctttatggtgatcatgatggagaa
gtatatgctacaggaggagaggttcaaattgcaatggaacctcaggcactctatgatgaa
gtgaaaacagtaccaattgcaaagctggataggacagttgctgagaaagccgttaaaaaa
tatgtagaagatgaaatggcaaggctccctgacagattatcagtaacttggcctgaaggg
gatgaattattgcctaatgagattaggcctgctggaacccctattggtgcattaagaatt
gaaatattgaataaaaagggggaagcaatgcaaaagcttccaggaacaagtcatggaggg
tcaaagaaactcctggttgagcttaaagtcattttacattcttcaagtggaaataaagag
attatttcacatattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaa
aatattcagaagttggggaattatacattgaaattacaagttgtattgaatgaaagtaat
gcagacacttacgcaggaagaccactaccatccaaagcaattaagttttctgttaaagag
ggtaagccagagaaattttcatttggtcttctggatcctccttttcgtgttggccttcca
ttcaatatccctctggaatttcaggatgaatttggtcataccagtcaactagtaactgat
attcagccagttcttgaagcaagtggtttatctttacattatgaagaaataaccaaagga
ccaaattgtgtaattcgaggtgttacagctaagggccctgtaaactcttgtcaaggcaag
aattataacctgaaggttattctgccaggcttaaaagaagactcacagattttgaaaatc
agattactacctggtcaccctcgtcgattgaaagtgaagcctgattccgaaattttagtt
atagaaaatggaacagctttcccatttcaggtggaagttttagatgaatcagacaacata
acagcacaaccaaaattaattgttcattgtaagttttcaggtgctccaaaccttccagtg
tatgttgtagattgcagtagttccggaaccagtattttaacaggatctgcaattcaagtt
cagaatattaaaaaagaccagacgcttaaagcaagaattgaaatacctagttgtaaagat
gtggcacccgtggagaagactattaagttgcttcccagtagccatgttgcaagactacaa
atattcagtgtagaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattgg
atagcaggcgatgttatgcataatcttatttttcaaatgtatgatgaaggtgaaagagaa
atcaatataacatcagctttagcagaaaaaattaaagttaattggactcctgagattaac
aaagaacacttgctacagggtctacttcctgatgtacaagtaccaacatctgtaaaagat
atgcgctattgccaagtttcgttccaagatgatcatgtgtctttggaaagtgcatttaca
gtaagaccacttcctgatgaacctaaacatttaaaatgtgagttaaaaggaggaaaaaca
gtacagatgggccaagagcttcaaggagaagtagttataataattacagatcagtacgga
aatcagattcaagcattttcaccaagttctttatctgctttgtcagttgctggggttgga
cttgatagctcaaatttgaaaacaacctttcaggaaaacacacagagtataagtgttaga
ggcatcagatttattccaggtcctcctggaaataaggatctttgttttacttggcgtgag
ttttctgactttattcgggtgcaactaatttctggacctcctgctaaacttctccttcta
gactggccagaactaaaggagttcattccagtgattaatggaagagatttacagaaccct
attattgttcaactttgtgatcagtgggataatccagcaccggtaccacatgttaaaata
agtcttacaaaagctagcaatttaaagctcatgccttcaaaccaacagcataaaacagat
gagaagggcagggctaatttgggagtattcagtgtttttgcccctaggggagagcatact
gtgcaggttaaagccatctataataagagtatcatagaaggacctgtaattaaattgatg
attcttccagacccagaaaaacccgttcgtctcaatgttaaatatgacaaagatgcttcc
ttcttagctgggggtcttttcactgattttatgattagtgttatttctgaagatgacagt
attattaaaaatattaatccagcacgtatttccatgaaaatgtggaagctctctaccagt
gggaaccgacccccagcaaatgcagaaacatttagttgtaataaaataaaagataatgac
aaggaagatggctgcttctatttcagggataaagtaattcctaataaagtgggggcatat
tgtatccagtttggttttatgatggataagacaaatattctcaacagtgaacagattata
gttgatgtcctgcctaatcaacctgtgaagttagtgcctaaaattaaaccacctacacca
gctgtttccaatgttcgctcagttgccagtaggaccttggtcagagatttacatctcagt
atcacggatgactacaataaccatactggaattgatttggtcggcactatagtagccacc
attaaaggttctaatgaggaagatactgataccccactctttattgggaaagtcagaaca
cttgaattcccctttgtgaatggttcagctgaaatcacgagtctggtgctggcagaaagt
agtcctggaagagatagtactgaatattttatcatatttgagccccagctgccactttta
tcaagaaccttagaaccatacatcctaccattcatgttttacaatgatgttaaaaagcag
caacaaatggcagcacttacaaaagaaaaggaccaattatctcagtctattattatgtat
aaaagtttatttgaagcaggccaacagcttcttaatgaaatgaaatgtcaagttgaagaa
gcaagattaaaagaggcccaattgcgaaatgaactaaaaatacataatattgacattcct
acaacacaacaggtgccacacattgaaacacttctgaaaagaaagctatcggaacaggaa
gaactaaagaaaaaaccgagaagatcatgtactcttccaaactatactaaaggcagtgga
gatgtgttgggaaagattgcacatctagcacaaattgaagatgatagagctgcaatggtt
atttcttggcatctggcaagtgacatggactgtgtagtcaccctaaccactgatgctgca
cgtcgtatctatgatgaaacccaaggtcgtcagcaggtgttgccccttgattctatttat
aagaagactcttccagattggaaaagatctctacctcatttccgaaatggaaaattgtat
tttaaacccattggagatccagtctttgctagagacttgttaacatttccagataatata
gaacattgtgaaacagtatttggtatgctgttaggagacaccattattttggataatctg
gatgcagccaatcattatagaaaagaggttgttaaaattacacactgtcctacactgttg
accagagatggagatcgaattcgaagtaatggaaagtttgggggccttcagaataaagct
cctccaatggataaacttcggggaatggtatttggagctccagtaccaaaacagtgcctg
atcttaggggaacaaatagatcttcttcagcagtatcgttctgctgtgtgcaaactagac
agtgtgaataaggattttaacagtcagttagagtaccttcacactccagatatgaagaag
aaaaagcaggaacttgatgaacatgagaaaaatctcaaattaatagaggaaaaactaggt
atgactcccatacgtaagtgtaatgactcattgcgtcagtcaccaaaggttgagatgaca
gattgtccaattcctcctaaaagaatgagacgagaagttacaagacaaaataggattata
accaaaacagatgtatga
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integrated database retrieval system
