Callithrix jacchus (white-tufted-ear marmoset): 100391578
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Entry
100391578 CDS
T03264
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100391578 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjc03041
]
100391578 (EFTUD2)
Spliceosome [BR:
cjc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100391578 (EFTUD2)
Complex C
U5 SnRNP specific factors
100391578 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
100391578
NCBI-ProteinID:
XP_002748128
Ensembl:
ENSCJAG00000012349
UniProt:
F7I888
LinkDB
All DBs
Position
5:complement(81263708..81313393)
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDIGDHDDDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggataccgacttatatgatgagtttgggaattatattggaccagagcttgattctgat
gaagatgatgatgaattgggtagagagaccaaagatcttgatgagatggatgatgatgat
gacgacgatgacataggggatcatgacgatgaccatcctgggatggaggtggtgctgcat
gaggacaagaagtattacccaacagccgaggaggtatatggccctgaggtggagaccata
gttcaagaggaagacactcagcctctcacagaacccattattaagccagtaaaaaccaag
aaattcactctgatggagcagacattacctgttacggtatatgagatggatttcttggca
gatctgatggataactcagagctcatcagaaatgtgaccctttgtggacatctccaccac
ggcaagacatgtttcgtagattgtttaattgagcagactcacccggaaatcagaaagcgc
tatgaccaagatctgtgctatactgacatcctcttcacagagcaagagagaggtgttggc
atcaaaagcactcctgtgacagtggtcttgccagacaccaaaggaaaatcttatctcttc
aatatcatggacaccccaggacatgtgaatttctctgatgaggtcacagctggcttgcgt
atctcagatggagtggtccttttcattgatgccgcggagggggtgatgctgaacacagag
cggctgatcaagcacgcggtacaggagaggctggcggtcactgtgtgcatcaacaagatt
gaccggctgatcctggagctgaagctgcctccaactgatgcgtattacaagctgcgccac
attgtggatgaggtcaatggattaataagcatgtattccactgatgagaacctgatcctt
tccccactcctgggtaacgtctgcttctccagctcccagtacagcatctgcttcacactg
ggctcctttgccaagatctacgctgacacctttggtgacattaattaccaagaatttgct
aaaaggctctggggtgacatctacttcaaccctaagacgcgaaagttcaccaaaaaggcc
ccaactagcagctcccagagaagtttcgtggagtttatcttggagcccctttataagatc
cttgcccaggttgtaggtgatgtggacaccagcctcccgcggaccctggacgagcttggc
atccacctgacaaaggaggagctgaaactgaacatccgccccctgctcaggctggtctgc
aaaaagttctttggcgagttcacaggctttgtggacatgtgtgtgcagcatatcccttct
ccaaaggtgggcgccaagcccaagatcgagcacacctacacgggcggtgtggactccgac
ctcggcgaggccatgagtgactgtgaccctgatggccccctgatgtgccacactactaag
atgtacagcacagatgatggagttcagtttcacgcctttggccgggtactgagtggcacc
attcatgctgggcagcctgtgaaggtactcggggagaactacaccttggaggatgaggaa
gactctcagatatgcaccgtgggccgcctttggatctctgtggccaggtaccacattgag
gtgaaccgtgttcctgctggcaactgggttctgattgaaggtgttgatcaaccaattgtg
aagacagcaaccataactgaaccccgaggcaatgaggaggctcagattttccggccattg
aagttcaataccacatctgttatcaagattgctgtggagccagtcaacccctcagagctg
cccaagatgcttgatggcctgcgcaaggtcaacaagagctatccatccctcaccacgaag
gtggaggagtctggcgagcatgtgatcctgggcaccggggagctctacctagactgtgtg
atgcatgatctgcggaagatgtactcggagatagacatcaaggtggctgacccagttgtc
acgttttgtgagacggtggtggaaacatcctccctcaagtgctttgccgaaacgcctaat
aagaagaacaagatcaccatgattgctgagcctcttgagaagggcctggcagaggacata
gagaatgaggtggtccagattacatggaacaggaagaagctaggagagttcttccagacc
aagtatgattgggatctgctggctgcccgttccatctgggcttttggccctgatgccact
ggccccaacattctagtggatgatactctaccctccgaggttgacaaggctcttcttggc
tcagtgaaggacagcatcgttcaaggtttccagtggggaaccagggagggccccctttgt
gatgagttgattcggaatgtcaagtttaagattctggatgcagtggttgcccaggagccc
ctgcaccgtggcgggggccagatcatccccacagccaggagagttgtctactctgccttc
ctcatggccactcctcgtctgatggagccttactactttgtagaggtccaggcgcctgca
gattgcgtctctgctgtttatacggtcctggccaggcgcagggggcacgtgactcaggat
gcacccattccaggctcccctctgtacaccatcaaagcctttatcccagccatcgactct
tttggctttgaaactgatctccggactcacacccagggacaagccttttctctgtctgtc
ttccaccattggcagattgtccctggtgatcctctggacaagagcattgtcattcgccct
ttggagccacagccggctcctcacctggcccgggaattcatgatcaaaactcgtcgtagg
aagggcctcagtgaagatgtgagcataagcaaattcttcgatgatcctatgttgctggaa
ctcgccaaacaggatgttgtgctcaattaccccatgtga
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