Callithrix jacchus (white-tufted-ear marmoset): 100406024
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Entry
100406024 CDS
T03264
Symbol
SLIT1
Name
(RefSeq) slit homolog 1 protein isoform X1
KO
K06838
slit 1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04360
Axon guidance
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
100406024 (SLIT1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cjc00536
]
100406024 (SLIT1)
Glycosaminoglycan binding proteins [BR:
cjc00536
]
Heparan sulfate / Heparin
Axon guidance molecules
100406024 (SLIT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
LRRNT
hEGF
LRRCT
LRR_9
LRR_1
DL-JAG_EGF-like
EGF_3
TMEM95
Motif
Other DBs
NCBI-GeneID:
100406024
NCBI-ProteinID:
XP_035124537
Ensembl:
ENSCJAG00000036372
LinkDB
All DBs
Position
12:complement(86492991..86683413)
Genome browser
AA seq
1676 aa
AA seq
DB search
MTAGWERARGCVCDRVCVVCARGACARGACPFFSSQQSVGSWSEGEGDAGGGTAEEPRTL
RPRRPPSVSAQAPSLGGARCLPARGLLGGSARGLHLEAAPDGDGQRLPPSGSRAGRGEGT
MALTPGRGSSAGRVRPELWMLLWAAAWRLGASACPALCTCTGTTVDCHGTGLQAIPKNIP
RNTERLELNGNNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQ
LHMLPELLFQNNQALSRLDLSENAIQAIPRKAFRGATDLKNLQLDKNQISCIEEGAFRAL
RGLEVLVALSHISSCWAGAKWLWFLPIRTLNNNNITTIPVSSFNHMPKLRTFRLHSNHLF
CDCHLAWLSQWLRQRPTIGLFTQCSGPASLRGLNVAEVQKSEFSCSGPGEAGRVPTCTLS
SGSCPAMCTCSNGIVDCRGKGLTAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRI
DLSNNQIAEIAPDAFQGLRSLNSLVLYGNKITDLPRGVFGGLYTLQLLLLNANKINCIRP
DAFQDLQNLSLLSLYDNKIQSLAKGTFTSLRAIQTLHLAQNPFICDCNLKWLADFLRTNP
IETSGARCASPRRLANKRIGQIKSKKFRCSAKEQYFIPGTEDYQLNSECNSDVVCPHKCR
CEASMVECSSLKLTKIPERIPQSTAELRLNNNEISILEATGMFKKLTHLKKINLSNNKVS
EIEDGAFEGAASVSELHLTANQLESIRSGMFRGLDGLRTLMLRNNRISCIHNDSFTGLRN
VRLLSLYDNQITTVSPGAFDTLQSLSTLNLLANPFNCNCQLAWLGDWLRKRKIVTGNPRC
QNPDFLRQIPLQDVAFPDFRCEEGQEEGGCLPRPQCPQECACLDTVVRCSNKHLRALPRG
VPKNVTELYLDGNQFTLVPGQLFTFKYLQLVDLSNNKISSLSNSSFTNMSQLTTLILSYN
ALQCIPPLAFQGLRSLRLLSLHGNDISTLREGIFADVTSLSHLAIGANPLYCDCHLRWLS
SWVKTGYKEPGIARCAGPPDMEGKLLLTTPAKKFECQGPPTLAVQAKCDPCLSSPCQNQG
TCHNDPLEVYRCACPSGYKGRDCEVSLDSCSSGPCENGGTCHAQEDEDAPFTCSCPTGFE
GPTCGVNTDDCVEHACANGGICVDGVGNYTCQCPLQYEGRACEQLVDLCSPDLNPCQHKA
QCVGTPDGPRCECVPGYAGDNCSENQDDCRDHRCQNGAQCVDEVNSYSCLCAEGYSGQLC
EIPPHPPAPKSPCEGTECQNGANCVDQGNRPVCQCLPGFGGPECEKLLSVNFVDRDTYLQ
FTDLQNWPRANITLQVSTAEDNGILLYNGDNDHIAVELYQGHVRVSYDPGSYPSSAIYSA
ETINDGQFHTVELVAFDQMVNLSIDGGSPMTMDNFGKHYTLNSEAPLYVGGMPVDINSAA
FRLWQILNGTSFHGCIRNLYINNELQDFTKTQMKPGVVPGCEPCRKLYCLHGICQPNATP
GPTCHCEAGWGGLHCDQPTDGPCHGHKCVHGQCVPLDALSYSCQCQDGYSGALCNQAGAP
AEPCRGLQCLHGHCQASATKGAHCVCDPGFSGELCEQESECRGDPVRDFHQVQRGYAVCR
TTRPLSWVECQGSCPGQGCCQGLRLKRRKFTFECSDGTSFAEEVEKPTKCGCALCA
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgactgctgggtgggagcgagcgcgcgggtgtgtgtgtgatcgtgtgtgtgtggtgtgt
gcacggggtgcgtgcgcgcgcggggcctgcccatttttctcctcgcagcagtcagttggg
agctggagtgagggagagggagacgcaggcggcggaacagcagaggagccgagaaccctc
cgcccaaggcgtcctccctcagtcagcgcacaggcgccgtcgcttggaggagcaaggtgc
ctcccagcccgcgggctcttgggtggctctgcccggggactgcacctggaggcggccccg
gacggggatggtcagcggctgccgccgtctggctcacgagcgggacgcggtgagggcacc
atggcgctgacgcccgggcgggggtcctcggcggggcgggtccggccggagctctggatg
ctgctgtgggcagccgcttggcgcctgggtgcctcggcgtgccccgccctctgcacctgc
acgggcaccacggtggactgccacggcacggggctgcaggccatccccaagaacatcccg
cggaacaccgagcgcctggaactcaatggcaacaacatcactcggatccataagaatgac
tttgcggggctcaagcagctgcgggtgctgcagctgatggagaaccagattggagcagtg
gaacgcggggcttttgatgacatgaaggagctggagcggctgcgactgaaccgaaaccag
ctgcacatgttaccagaactgctgttccagaacaaccaggctttgtcaagactggacttg
agtgagaatgccattcaggccatccccaggaaagcttttcggggagctacggatctcaaa
aatttacagctggacaagaaccagatcagctgtatcgaggaaggggccttccgtgctctg
cggggactggaggtgctggtggccctgtcccacatcagctcctgctgggcaggtgctaaa
tggctctggtttctcccgatcaggactctgaacaacaacaatatcactaccatccctgtg
tccagcttcaaccacatgcccaagctacggaccttccgcctgcactccaaccacctgttt
tgcgactgccacttggcctggctctcgcagtggctgaggcagcggccaaccatcgggctg
ttcacccagtgctcaggcccagccagcctgcgtggactcaatgtggcagaggtccagaag
agtgagttcagctgctcaggcccaggagaagcggggcgcgtgcccacctgcaccctgtcc
tccggctcctgcccggccatgtgcacctgcagcaatggcatcgtggactgtcgtggcaaa
ggcctcactgccatcccagccaacctgcccgagaccatgacggagatacgcctggagctc
aatggtatcaagtccatcccccccggagccttctcaccttacagaaagctacggaggata
gacctgagcaacaaccagatcgcggagattgcacccgatgccttccagggcctccgctcc
ctgaactcactggtcctctatggaaacaagatcacagacctcccccgcggtgtgtttgga
ggcctgtacaccctacagctcctgctcctgaacgccaacaagatcaattgcatccggccc
gatgccttccaggacctgcagaacctctcgctgctctccctgtatgacaacaagatccag
agccttgccaagggcacgttcacctccctgcgggccatccagactctgcacctggcccag
aaccctttcatttgcgattgtaacctcaagtggctggcggacttcctgcgcaccaatccc
atcgagacgagtggggcccgctgtgccagtccccggcgccttgccaacaagcgcatcggg
cagatcaagagcaagaagttccgatgctcagccaaagagcagtacttcattccaggcacg
gaggattatcagctgaacagcgagtgcaacagtgacgtggtctgtccacacaagtgccgc
tgtgaggccagcatggtggagtgctccagcctgaagctcaccaagatccccgagcgcatc
ccccagtccaccgctgaactgcgattgaataacaatgagatttccattttggaggccact
gggatgtttaaaaaacttacacatctgaagaaaatcaacctaagcaacaacaaggtgtca
gaaattgaagacggggccttcgagggcgcagcctctgtgagtgagctgcacctgactgcc
aaccagctggagtccatccggagcggcatgttccggggtctggatggcctgaggaccctg
atgctgcggaacaaccgcatcagctgcatccacaatgacagcttcacgggcctgcgcaat
gtccggctgctctcgctctacgacaaccagatcaccaccgtgtccccaggggcctttgac
accctccagtccctctccacactgaacctcctggccaaccctttcaactgcaactgccag
ctggcctggctgggagactggctgcggaagcgcaagattgtgacagggaaccctcgctgc
cagaaccccgacttcttgcggcagattcccctgcaggacgtggccttccctgatttcagg
tgtgaggaaggccaggaggaggggggctgcctgccccgcccgcagtgcccacaggagtgc
gcctgcctggacactgtggtccgatgcagcaacaagcacctgcgggccctgcccaggggc
gtccccaagaacgtcacagaactctatttggatgggaaccagttcacgctggttccagga
cagctgtttactttcaagtacctgcagctcgtggacttgagcaacaacaagatcagttcc
ttaagcaattcctcctttaccaacatgagtcagctgaccactctgatcctcagctacaat
gccctgcagtgcatcccgccactggccttccagggactccgctccttgcggctactgtcc
ctccatggcaatgacatctccaccctccgagagggcatcttcgcagatgtgacctccctg
tctcacctggccattggtgccaaccccctgtactgtgactgccacctccgctggctgtcc
agctgggtgaagactggctacaaggaaccaggcattgcccgctgtgctgggcccccagac
atggagggcaagctgctcctcaccacgcctgccaagaagttcgaatgccaaggtcccccc
acgctggctgtccaggccaagtgtgatccctgcttgtccagtccctgccagaaccagggc
acctgccacaatgacccccttgaggtatacaggtgtgcttgccccagcggctataagggc
cgagactgtgaggtatccctggacagctgttccagtggcccctgtgaaaacgggggcacc
tgccatgcacaggaggacgaggatgccccattcacgtgctcctgtcccactggctttgaa
ggaccaacctgtggggtgaacacagatgactgtgtggagcacgcctgtgccaatgggggc
atctgtgtggacggcgtgggcaactacacctgccagtgccccctgcagtatgagggaagg
gcctgtgagcagctggtggacttgtgctctccagatctgaacccgtgtcaacacaaggcc
cagtgtgtgggcaccccggatgggcccaggtgtgagtgtgtgccaggttacgcaggtgac
aactgcagcgagaaccaggatgactgcagggaccaccgctgccagaatggggctcagtgt
gtggatgaagtcaacagctactcctgcctctgtgctgagggctacagcggacagctctgt
gagatccctccccatccgcctgcccccaagagtccctgtgaggggactgaatgccagaat
ggggccaactgtgtggaccagggcaacaggcccgtgtgccagtgcctcccaggcttcggt
ggccctgagtgtgagaagttgctcagtgtcaactttgtggatcgggacacttacctgcag
ttcactgacctgcaaaactggccacgggccaacatcaccctgcaggtctccacggcagag
gacaatgggatccttctgtacaacggggacaacgaccacattgcagttgagctgtaccag
ggccatgtgcgtgtcagctacgacccaggcagctaccccagctctgccatctacagtgcc
gagacgatcaatgatgggcagttccacactgttgagctggtcgcctttgaccagatggtg
aatctctccattgatggaggcagccccatgaccatggacaactttgggaaacattatacg
ctcaacagtgaggcgccactctatgtgggagggatgcccgtggacatcaactcagctgcc
ttccgcctgtggcagatcctcaacggcaccagcttccacggatgcatccgaaacctgtac
atcaacaatgagctgcaggacttcaccaagacacagatgaagccgggcgtggtgccaggc
tgtgaaccctgccgcaagctctactgcctgcatggcatctgtcagcccaatgccaccccg
gggcccacgtgccactgtgaggctggctgggggggcctgcactgcgaccagcccactgac
ggcccctgccatggccacaagtgtgtccatgggcaatgcgtgcccctcgacgctctttcc
tacagctgccagtgccaggatgggtactcgggggccctgtgcaaccaggctggggccccg
gcagagccctgcagaggcctgcagtgcctgcatggccactgccaggcctcggccaccaag
ggggcacactgtgtgtgtgaccctggcttttcgggcgagctgtgtgagcaagagtccgag
tgccggggggaccctgtccgggactttcaccaggtccagaggggctatgccgtctgccgg
accacgcggcccctgtcatgggtggagtgccagggctcgtgtccaggccagggctgctgc
cagggccttcggctgaagaggaggaagttcacctttgagtgcagcgatgggacctctttt
gccgaggaggtggaaaagcccacaaagtgtggctgtgccctctgtgcatag
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integrated database retrieval system
