Callithrix jacchus (white-tufted-ear marmoset): 100408692
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Entry
100408692 CDS
T03264
Symbol
RIGI
Name
(RefSeq) antiviral innate immune response receptor RIG-I
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04064
NF-kappa B signaling pathway
cjc04622
RIG-I-like receptor signaling pathway
cjc04623
Cytosolic DNA-sensing pathway
cjc05160
Hepatitis C
cjc05161
Hepatitis B
cjc05162
Measles
cjc05164
Influenza A
cjc05168
Herpes simplex virus 1 infection
cjc05169
Epstein-Barr virus infection
cjc05171
Coronavirus disease
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
100408692 (RIGI)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
100408692 (RIGI)
04623 Cytosolic DNA-sensing pathway
100408692 (RIGI)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
100408692 (RIGI)
05160 Hepatitis C
100408692 (RIGI)
05171 Coronavirus disease
100408692 (RIGI)
05164 Influenza A
100408692 (RIGI)
05162 Measles
100408692 (RIGI)
05168 Herpes simplex virus 1 infection
100408692 (RIGI)
05169 Epstein-Barr virus infection
100408692 (RIGI)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cjc04054
]
100408692 (RIGI)
Enzymes [BR:
cjc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100408692 (RIGI)
Pattern recognition receptors [BR:
cjc04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
100408692 (RIGI)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_22
AAA_25
Syntaxin_2
Motif
Other DBs
NCBI-GeneID:
100408692
NCBI-ProteinID:
XP_035163407
Ensembl:
ENSCJAG00000007741
UniProt:
U3DJ98
F7IL46
LinkDB
All DBs
Position
1
Genome browser
AA seq
925 aa
AA seq
DB search
MTVEQRSSLRAFRDYIRKTLDPTYIMSYMAPWLREEEMQYIQAEKNNKGPVEAATLFLKI
LLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFQKIEKLEEYRLLLKRLQPEFKSRIIP
TDILPDLSECLINQECEEIIQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKDRN
KFSELWIVEKGIKDVETEDLEEKLETSDIQIFYQEDPECQNLSENSCLPSEVSDTNLYSP
FKPRSYQLELALPAKKGKNTIICAPTGCGKTLVALLICEHHLKKFPQGQKGKVVFFANQI
PVYEQQKSVFSKYFERLGYRVTGISGATAENVPVKQIVENNDIIILTPQILVNNLKNGTI
PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT
DEALDYICKLCASLDASVIATVQDNLKELEQVVYKPQKFFRKVESRISDKFKCIIAQLMR
ETEGLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL
YTSHLRKYNDALIISEHARMKDALHYLKDFFSNVRAAGFDETEQDLTQRFEEKLQELESI
SRDPSNENPKLEDLCFILREEYHLNPETITILFVKTRALVDALKNWIEGNSKLSFLKPGI
LTGRSKTNQNTGMTLPAQKCILDSFKAHGDHNILIATSVADEGIDIAQCNLVILYEYVGN
VIKMIQTRGRGRARGSKCFLLTSNAAVIEKENINMYKEKMMNDSILRLQTWDEEVFKEKI
LHIQIHEKFIRDSQEKPKPVPDKENKKLLCRKCKAFACYTADIRVIEESQFTVLGDAFKE
CFVSRPHPKPKQFSNFYKRAKIFCARQDCSHDWGIHVKYKTFEIPVIKIESFVVEDIATG
VQTLYSKWKDFHFEKIPFDAAEMSK
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtcgagcagcggagcagcctgcgagccttccgcgattatatccggaagaccctg
gaccctacctacatcatgagctacatggccccctggcttagggaggaagagatgcagtac
attcaggctgagaaaaacaacaagggtccagtggaggctgccacactttttctcaagatc
ctgttggagctccaggaggaaggctggttccgtggctttttggatgccctagaccatgca
ggttattctggactttatgaagccattgaaagttgggatttccaaaaaattgaaaagttg
gaggagtatagattacttttaaaacgtttacaaccagaatttaaaagtagaattattcca
acagatatccttcctgatctatctgaatgtttaattaatcaggagtgtgaagaaattata
cagatttgctccactaagggaatgatggcaggtgcagagaaattggtggaatgccttctc
agatcagataaagagaactggcccaaaactttgaaacttgctttggagaaagataggaac
aagttcagtgagctgtggattgtagagaaaggtataaaagatgtggaaacggaagatctt
gaggagaagttggaaacttctgacatacagattttctaccaagaagatccagaatgccag
aacctgagtgagaattcatgtctgccttcagaagtgtctgatacaaacttgtacagccca
tttaaaccaagaagttaccaattagagcttgctttgcctgccaagaaaggaaaaaacaca
ataatatgtgctcctacaggttgtggaaaaaccttagttgcactccttatatgtgaacat
catcttaaaaaattcccgcaaggacaaaaggggaaagttgtctttttcgctaatcagatc
ccagtgtatgaacagcagaaatctgtattctcaaaatactttgaaagacttgggtataga
gttacaggcatttctggagcaacagctgagaatgtcccagtgaaacagattgttgagaac
aacgacatcatcattttaactccacagattcttgtgaacaaccttaaaaatggaacgatt
ccatcactgtccatctttactttgatgatatttgatgaatgccacaacactagtaaacaa
catccatacaatatgatcatgttcaattatctagatcagaaacttggaggatcttcaggc
ccactgccccaggtcattgggctgactgcctcggttggtgttggggatgccaaaaacaca
gatgaagctttggattatatctgcaaactctgtgcttctcttgatgcgtcagtgatagca
acagtccaagacaacctgaaggaactggagcaagttgtttataagccccagaagtttttc
aggaaagtggaatcacggattagcgacaaatttaaatgcatcatagctcagctgatgaga
gagacagagggtctggcaaagagaatctgcaaagaccttgaaaacttatctcaaattcaa
aatagggaatttggaacacaaaaatatgaacaatggattgttacagttcagaaagcatgc
atggtgttccagatgccagacaaagatgaagagagcaggatttgtaaagccctgtttttg
tacacttcacatttgcggaaatataatgatgccctcattatcagtgagcatgcacgaatg
aaggatgctctgcattacttgaaagacttcttcagcaatgtccgggcagcaggattcgat
gagactgagcaagatcttactcagagatttgaagaaaagctgcaggaactagaaagtatt
tccagggatcccagcaatgagaaccctaaacttgaagacctctgcttcatcttaagagaa
gagtaccacttaaacccagagacaataacaattctctttgtgaaaaccagagcacttgtg
gatgctttaaaaaattggattgaaggaaattctaaactcagttttctaaaacctggcata
ttgactggacgtagcaaaacaaatcagaacacaggaatgactctcccagcgcagaagtgt
atattggattcatttaaagcccacggagatcacaatattctgattgccacctcagttgct
gatgaaggcattgacattgctcagtgcaatcttgtcatcctgtatgagtatgtgggtaat
gtcatcaaaatgatccaaaccagaggcagaggaagagcaagaggtagcaagtgcttcctt
ctgactagtaatgctgctgtaattgaaaaagagaacataaacatgtacaaagaaaaaatg
atgaatgactccattttacgccttcagacgtgggatgaagaagtatttaaggaaaagatt
ctgcatatacagattcatgaaaaattcatcagagatagtcaagaaaaaccaaaacctgta
cctgataaggaaaataaaaaactgctttgcagaaagtgcaaagccttcgcatgttacaca
gctgacataagagtgatagaggaatcccaattcactgtgcttggagatgcttttaaggaa
tgctttgtgagtagaccacatcctaaaccaaagcagttttcaaatttttataaaagagca
aagatattctgtgcccgacaggactgcagccatgactggggaatccatgtgaagtacaag
acatttgagattccagttataaaaattgaaagttttgtggtggaggatattgcaactgga
gttcagacactgtactcaaagtggaaggactttcattttgagaagataccatttgatgca
gcagaaatgtccaaatga
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