Cryptomeria japonica (Japanese cedar): 131034286
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Entry
131034286 CDS
T10556
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
131034286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131034286
Enzymes [BR:
cjf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
131034286
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
131034286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
131034286
NCBI-ProteinID:
XP_057821717
LinkDB
All DBs
Position
5:354799301..355107563
Genome browser
AA seq
1180 aa
AA seq
DB search
MTDSTVNFSTLCEMLEAITRSKKGTMKRKHVRTFLDHVYKGGEYFSAIRLILPQLDRERG
AYKLKEAQLAKCLTDALGLSKDSPDAHRLINWRKGGAKAGANAGNFPMVAAEVLHQRQRV
MSGGLKIKDVNDLLDRLEAVESREEKTTVLQELISKTNTFEMKWILMIILKDMKLGMGEK
SLFHQFHPDAEDMFNVTCDLKMVCEKLKDRNKRFKRQDIEVGKPVRPQLASRVPDIETAW
KKLHGKQVVVECKFDGDRIQVHKNGREVHFFSRNFFDHKEYEAAMSSVILQNVQVDKCIL
DGEMLVWDKGSNRFADFGANQEIAKAARDGVETNQQLCYMAFDILYVGDSSVIHQGLHER
HQLLYEIVKPLKGQLEILLPQDNLNSCLALGEHCWSFAAHNAEDVVKFFQETVENRDEGI
ILKDLDSKWEPGDRSGKWIKLKPDYINTGSDLDVLIIGGYYGSGRHGGEVAQFLLGLAQN
STHVGYPTRFLSFCRVGSGLSDEECSVLVSRLKPYFRRNEKNSKVPSFYTVTNNWKERPD
VWIERPENRSVILEITSDVRMIKSEVFASPYSLRFPRIRRVRYDKPWNECLDVQTFLDLV
QSSSGTIQKADHYTGLGQRKPKHIKGTSKGEKRMLTVVPSHMLMTDVSDVKRETLIFKNL
LFYFVNFPPEYSLEFFHKMVVEHGGSLSLNFNDSVTHAIAADKKGIKYQAATKHGDVIHY
SWVIDCCKQKSLLPLRAKYFLNLSDLTKEKMKEDIDDFGDHYLWDLDILDLKQLFSNLQD
SKLMKTVAHAEDYKKKYCPSNKWCQFHNCSVYFHHIIHSTNADSQTVSELVLRRLKMEII
MHGGVVTSMLCDATHMIVFSAADHQVPFEIIIKSFSSAEKNILKKKRIHILSHLWVEDSL
GNHMQLPESSYSLWPNMDSHESLQSNNMEDTTVDIQEDDAAWKNMQDYTERPENEDEPEK
SPAEKRSKQRKLNLHKKSRKRPVRRCTTALKLNDTSSESNTSTENLGKHTSMEGKSPKIP
VGSGQEEVDRQKSSFEEENLHQDDMNKKNKLMEMTTCSSRKGKKMQKRSGEKGSSHKNHK
QENDSPVTDYTSKLENPKTTNKDGSKLLTENIADSVETMLADMLPGFNFKTDRASNPLPV
LSSGPPEENDRIIAQGEGVAAQKKRKVSYKDLVEKLLDDK
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgacagactcaacagtgaatttcagcacgctgtgcgagatgctggaggcaatcacgcga
agcaaaaagggtacgatgaaacgcaagcatgtgcggacgttcctggaccacgtttacaag
ggcggtgagtatttcagtgcaattcggcttattttgcctcagttggacagagagcggggc
gcatataagctcaaggaagctcaacttgccaaatgtttgacggacgctctcggcctctcc
aaggactctcccgacgcgcacaggctcatcaattggcggaaaggcggagccaaagctggc
gccaacgccggcaatttccccatggtcgcagccgaggttttgcatcaaaggcaaagagta
atgtctggtggcctaaagattaaggatgtaaatgatcttcttgaccgattggaagcagtt
gaaagcagggaggagaagacaacggttcttcaagagcttatcagcaaaacaaataccttt
gaaatgaagtggattttgatgataattcttaaggatatgaagttgggtatgggtgagaaa
agcctgttccatcagtttcatccagatgcagaagatatgtttaatgtgacttgtgactta
aagatggtttgtgaaaagcttaaagatcgaaataaaaggttcaaaagacaggacattgag
gtggggaaacctgtgcgcccacagttagcctctagagtgccagacattgagactgcatgg
aaaaagttacatggcaaacaggtggttgttgagtgcaaatttgatggcgaccgaatccaa
gtgcataagaatggaagagaagtgcacttcttttcaaggaacttttttgatcacaaagag
tatgaagctgcaatgtcaagtgtaatcctccaaaatgttcaagtggacaaatgtatactt
gatggtgaaatgctagtttgggataagggtagcaatcggtttgcagactttggagcaaac
caagaaatagcaaaggccgctagggatggagtagaaaccaatcaacagctttgctacatg
gcttttgatattctatatgtgggagattctagtgtgatccaccaaggcttgcatgagcga
catcaactactttatgagattgtcaagcctttgaagggacaactagaaattttacttcct
caagataatctaaattcatgccttgctttgggtgaacattgttggtcatttgcagcccat
aatgcagaagatgttgtaaagtttttccaagaaactgttgaaaatagagatgaaggcata
attttgaaggatttagattcaaaatgggaacctggtgaccgaagtggaaaatggataaag
ctgaaaccagattatattaatactggatctgatcttgatgttcttatcataggaggttat
tatggatctggacgccatggaggagaggttgcacaatttttacttggtcttgcacagaat
tcaacacatgtgggctaccccacaagatttctctcattttgcagagttggatcaggcctc
tctgatgaagaatgcagtgttcttgtgagcagactgaaaccatattttaggcgaaatgaa
aagaactcaaaggtgccaagcttttatacagtgacaaataattggaaggagagacctgat
gtttggattgaaagaccagaaaacaggtcagttatactagagataacaagtgatgtgcgg
atgattaagtcagaggtctttgcctctccttatagtttgagattcccacgcatacggagg
gtgcgatatgacaagccttggaatgaatgccttgatgtacagacatttttggacttagta
caatcaagtagcgggaccatacagaaagctgatcactatacaggtttgggtcaacggaag
ccaaaacatatcaaaggcacttcaaagggagaaaagaggatgcttactgttgtaccatcc
catatgctaatgactgatgtatctgatgttaaaagggagacattgatctttaagaatttg
ttgttctattttgtaaattttcctcctgaatattcactggagttttttcacaaaatggtg
gtggaacatgggggttcattgtcattgaactttaatgattcagttactcatgccattgca
gctgataagaaaggaatcaaatatcaagctgcaacgaagcatggggatgtcattcattac
tcttgggtcattgactgttgtaaacagaagtctctcttgccattacgagcaaaatacttc
cttaatctttcagacttaaccaaggagaaaatgaaagaggatattgatgattttggtgat
cactacttatgggatcttgatattttagatctgaaacagcttttcagtaacctacaagat
tctaaacttatgaaaactgtcgcacacgctgaagattacaaaaagaagtattgcccgagt
aataagtggtgccagtttcataactgctctgtttattttcaccacatcattcactccaca
aatgcagattcacaaacagtttcagaactcgtattgagaaggttaaagatggaaatcata
atgcatggaggtgtggtaactagcatgctatgtgatgctacacatatgatagtgttttct
gcagctgaccaccaggtgcctttcgagataattataaaaagcttttctagtgcagaaaag
aatattctcaagaaaaaaagaatccacattttaagtcatttatgggtggaagactccttg
ggaaatcacatgcaactcccagaaagttcctatagtttgtggcctaacatggattcacat
gagagtttacaatctaacaatatggaggacacaacagttgacattcaggaagatgatgca
gcctggaaaaatatgcaggattacacagaaagacctgaaaatgaagacgaaccagagaaa
agtcctgcagaaaagagaagtaaacaaagaaaactaaatctccataagaaatcgagaaaa
cgaccagtaaggcgatgtactactgccctcaaactcaatgacacctcatcagagagcaat
acatcaactgagaacctgggaaaacacacaagtatggaaggaaagtctccaaaaatacct
gtgggaagtggtcaggaagaagttgataggcaaaaatcttcttttgaggaagaaaacttg
catcaagatgacatgaataaaaagaataaactgatggaaatgacaacatgtagcagtaga
aaaggtaaaaagatgcagaagcggtctggagaaaaaggaagctcacacaaaaatcacaag
caggaaaatgattcaccagttacagattacactagcaaactcgaaaacccaaagacgacc
aataaagatggatccaaattattaacagagaatatagctgattctgtggaaaccatgctg
gctgatatgttacctggctttaatttcaaaactgatagagctagcaatcctttacctgtt
ctgagttctggacctccagaggaaaatgataggatcattgctcagggggagggggttgca
gcacaaaagaaaaggaaagtgagttataaagatctcgtagaaaaactgctggatgacaaa
taa
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