Cryptomeria japonica (Japanese cedar): 131038068
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Entry
131038068 CDS
T10556
Name
(RefSeq) transcription factor PIF3 isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf04075
Plant hormone signal transduction
cjf04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
131038068
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
131038068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131038068
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
131038068
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_LHW
bHLH_SAC51
Motif
Other DBs
NCBI-GeneID:
131038068
NCBI-ProteinID:
XP_057826355
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All DBs
Position
9:complement(173889946..173898394)
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AA seq
656 aa
AA seq
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MTQRVPCWDSEVNNSSSSNSMFNVNKSRAWDHEGRNDMADQFYQAVPDYVQVAELTWKDG
HLAMQELGNRAPNRHQQKFSSSSFGVPPGYLWANDQPAVLTRRSQGNEKLEVEGTLDAIV
ARSIDAPVSNLHSIDEEMASWFQYPLNEKNCHDALVPAFVPSIPTKSQGSSPANIISPSI
PSGVHQQGPRDGSMNFSHFSKPAVMMKAHLQALGSASGPTNIQRVRQYGGEAEVKLSNIS
IVGSTGGGHHGHGTNSEDSHPALSTHANTLTSKNCAPLPPNLPSSRSPCKAAPSTTTAAT
TITSDCDCMIAKAVEDQSGTSAIIGKEITTSEMNCDAMELTLISTSQGSPDNSMTEKVGK
EPCSTRWKRKSRGEDSGCQSEDQDDDHSAKAKKPQPSRRSNSGKRSRAAAVHNQSERRRR
DRINERMKALQKLIPNSSKTDKASMLDEAIEYLKHLQAQLQMMCLRNGMNIPPMMMPLGM
QQLQMSLLASLGPMGLGMGMAGVGLGMGMGMMDMNSVAAAGRAAMVPMGQPLTGTSSHAI
PVSVHPATFIQPNLAAAGFPSAPDANDRFQNSAIVDPYSAFMACQRQSMNMDLYNSMALL
QQQHLQQQQQQQYPHLQLLKQHQQHLNHQQQQHSNHHHQQQQHPNHLQQQQVNNCK
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgacccagcgagtaccctgctgggacagtgaggtaaataacagtagcagcagcaacagc
atgtttaatgtaaacaaatccagggcatgggaccacgaggggcgcaacgatatggcagat
cagttttatcaagctgtgccggactatgtccaggttgcagagctgacttggaaagatggc
catttggccatgcaagagctgggaaacagagcacccaataggcatcagcagaagttctct
tcctcctcttttggagtgcctccaggttatctctgggcaaatgatcagcctgctgtcctc
accaggagatcacaaggcaatgagaaattagaagtggagggaactttggatgccattgtg
gcccgatctattgatgctccagtgtcgaatttgcattccatagacgaggaaatggcgtcc
tggtttcagtatcctctcaatgaaaaaaattgccatgatgcattggttcctgcttttgtt
ccctctatccccacaaaatctcagggctcgagtccagcaaatatcatatctccaagtatc
ccaagtggtgtacatcagcaaggccccagggatggctccatgaacttctcccacttctcg
aaaccggcagtgatgatgaaggcgcatctacaagccctcggcagtgccagcggtcctacc
aatatacaacgagtgaggcagtatggtggggaagctgaggtcaagctttcaaatatcagt
atcgtgggatccaccggaggaggtcatcatggtcatggcactaattctgaagactcccat
cctgccttgagtactcatgcgaacactttaacctccaaaaactgtgcccctcttcctcca
aacttgcccagtagcaggagtccttgcaaggccgcaccctctactactactgctgctact
actatcacttctgattgtgattgtatgattgccaaagctgttgaggaccagagtgggact
agtgctattattggcaaggaaataactacctcagaaatgaactgtgatgctatggagctt
accttgatttcgacctcccagggctcccctgacaatagcatgacagagaaggtcgggaaa
gagccttgcagtaccagatggaagaggaaatcaagaggagaagattcaggctgccaaagt
gaggaccaggatgatgatcactctgctaaagcaaagaaaccacaacctagcagacgctcc
aactctggcaaaaggagtagagctgcagctgtgcataatcaatctgagaggaggcgtcga
gataggattaatgaaagaatgaaggctttgcagaaattaatacccaactctagcaagact
gacaaagcttcaatgctggatgaggcaatcgagtacttgaagcatctccaagcacaattg
cagatgatgtgtctcagaaatggaatgaacattcctcccatgatgatgcccttggggatg
cagcagctgcagatgtctctgttggcatctttaggtcctatgggactaggcatgggaatg
gcaggtgttggtcttggaatgggaatggggatgatggacatgaattcagttgcagctgca
ggacgagctgctatggtaccaatgggccaacctctcactgggacaagctcccatgccatt
ccagtctcagttcatccagcgacttttattcaacccaatctagcagcagctggattccct
tctgcccctgatgctaatgatcgattccaaaactctgcaattgtagatccctatagtgcg
ttcatggcttgccaacgtcagtccatgaatatggatctgtacaactccatggctttgctg
cagcaacagcaccttcagcagcagcagcagcaacagtatccacaccttcaactgctgaag
cagcatcagcaacacctaaatcatcagcagcagcaacactcaaatcatcatcaccagcaa
cagcaacacccaaatcatctacagcagcaacaagtcaataattgcaaatga
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