Cryptomeria japonica (Japanese cedar): 131059975
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Entry
131059975 CDS
T10556
Name
(RefSeq) transcription factor PIF1 isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf04075
Plant hormone signal transduction
cjf04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
131059975
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
131059975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131059975
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
131059975
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
131059975
NCBI-ProteinID:
XP_057849020
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Position
8:complement(258918777..258926927)
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AA seq
804 aa
AA seq
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MLSAGGTRNTTPHRSIAATNREGNEDRITDKTHCNKQAFHCPETDLKYSMNHCVPNWDSE
NGIMPSPDFLPMTKSNWDTAQQKRSLLPEHDIEELVWENGPVVNKVIKRPLPSQFSKSLQ
NDDAVLPGKPSLVGKDNVLDSVVHDMTTANASSIQEDEMASWLHYPLDDSLEKEYCSDFF
GGMPSTNVHLFRDSIGAQVNHVPAEKVSSVQVQKGSSLPSDCNSVPWTGGFGTMVNAANT
AGSSNMGKDSGPRSVSSDKAMALGAGRASGLIPQSGSDTFAKVRTATQLPVSKWHNSVQP
SSNSEGNQSPCQKTATQSVSPLAMQPPKMQTMDIGHMKLGSRSRVVNFSHFSRPAATIKA
NLQSISSVSGLSTIGISNRVDKLREDGGAPAEPSIMESTTSDMTTITSSTATISQVHDIS
YCHTRQNPQPVRSSDLVTCSEDVTACSAKAPEQLGSQISNVARSLASGGPEKCGEVGDVQ
EPTITSSSGGSGNSAGRMGKEPANTSKRKGRDAEESECQSEDVEYESVDAKKQAPPRTTS
KRSRAAEVHNQSERRRRDRINEKMRALQELIPHCNKSDKASMLDEAIEYLKTLQLQVQIM
SMGGGMGISPMVFPGGMQHFQVPQMAHLSHMGMGMGMGMGMGMGYSMGMLDMGAASVRPV
MPLPPMHVSALPASTIHCPAAMPMSGMPGPSLPLPRIPGTGIQVSGLPVSTLPVSGLSGT
AQPALGSSSAANSTNLQEQLQGANVIDPYKFYLSRPQMQLSSQAMNGNLYNVPMAQSAPQ
NPTQPSGRGLPNMEPGSGNVGAAG
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgctatctgcaggaggcacaaggaatactactccacataggtcgattgctgctaccaac
agggaagggaatgaagacaggataacagacaagactcactgcaacaaacaagctttccac
tgcccggaaactgatctgaaatacagcatgaatcattgtgtaccgaattgggactcggaa
aatggaattatgccttccccagatttccttccaatgacaaagtcaaactgggatactgca
caacagaagagatcgttgttgccagagcatgatattgaagaacttgtgtgggaaaatggt
ccagttgtgaataaagtgatcaaacgccccttgcccagtcagttttctaaatctctgcaa
aatgatgatgctgtgttacccggaaagccttcccttgtcggaaaggataacgttttggat
tcagttgtacatgatatgacaacagccaatgctagttccattcaggaagatgaaatggct
tcatggctacattatcctcttgacgattctctggaaaaagagtactgttctgatttcttc
ggaggaatgcctagcacaaatgttcacttgtttagagattcaattggagcacaggttaat
catgtacctgctgaaaaggtttccagtgttcaggtacagaagggatcttctttacccagc
gactgcaattcagtaccatggacaggaggatttgggactatggtcaatgctgcaaacacg
gcaggttcaagcaatatgggaaaggattctggcccaagatcagtcagttcagacaaggct
atggctctgggtgcaggaagggcatctgggctgatacctcaatctggttctgacacattt
gccaaagtccggactgccactcaactgccagtttccaaatggcataatagtgttcagcct
tctagtaattcagaaggtaaccagtctccctgtcaaaagaccgctacacaatccgtttct
cctctggctatgcaacctccaaaaatgcaaactatggacataggacatatgaagctaggt
agtagatcaagagtagtgaatttttcccacttttcaagaccagcagccacaattaaagca
aatctgcaaagcataagctcagttagcggactatcaacaatagggatatcgaatagagta
gataagttaagagaggatggaggtgcacctgcagaaccctctataatggagtcaaccact
agtgatatgactacgattacctcaagtactgcaactattagtcaagtccacgatataagt
tattgtcatactcgtcagaatccacagccagtgagaagttctgaccttgtaacatgttca
gaagatgttactgcttgcagtgctaaagccccagagcaactaggaagccaaatttcaaat
gttgctagaagtttggcatcaggaggaccagagaaatgtggggaggtaggtgatgttcaa
gaacctacaattacttcctcctcaggaggatcaggtaacagtgcaggaaggatgggaaaa
gaacctgccaatacaagcaagaggaagggtagagatgctgaggagtcagagtgccagagt
gaggatgttgaatatgaatctgtggatgcaaagaaacaagctccaccacgcacaacatct
aaaagaagtcgagctgcagaagttcacaatcagtcagagagaaggcgaagggacaggata
aatgaaaaaatgagggcattgcaagagctcatacctcactgtaacaagtctgacaaagct
tcgatgctggatgaagctattgaatacttgaagacacttcagttgcaagtacagattatg
tcaatgggaggtggaatgggtatatctccaatggtttttcctgggggcatgcagcatttt
caagtgccacagatggcacatttgtctcatatgggtatgggtatgggcatgggcatgggc
atgggcatgggttatagcatgggaatgctagatatgggtgctgcttcagttcggcctgtt
atgccgctacctccaatgcatgtgtcggcacttcctgcttcgacaattcactgtccagca
gcaatgccgatgtctggaatgcctggaccaagccttccattaccaaggattcctggaaca
ggaatacaagtatctggtctccctgtatcaacacttcctgtatctggtttatctggaaca
gctcagcctgcattagggtcaagttcagcagcaaactctaccaatttacaggaacaattg
cagggtgcaaatgtaatagatccttacaagttttatctcagtcgtccacaaatgcaactc
tcttcccaggccatgaatggtaacttgtataatgtcccaatggcacagtccgcacctcag
aatccaactcagccaagtggcaggggacttcccaatatggaacctggatctggcaatgtg
ggagcggctggttag
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