Cryptomeria japonica (Japanese cedar): 131063597
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Entry
131063597 CDS
T10556
Name
(RefSeq) ABC transporter I family member 20 isoform X1
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131063597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131063597
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131063597
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_23
AAA_29
AAA_25
Arf
AAA_15
Zeta_toxin
Gp138_N
TsaE
AAA_22
AAA_30
Auxin_canalis
AAA_7
ORC-CDC6-like
Motif
Other DBs
NCBI-GeneID:
131063597
NCBI-ProteinID:
XP_057853446
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Position
4:complement(337085598..337129918)
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AA seq
318 aa
AA seq
DB search
MEEKSVTLEVKNLSFTYPGLDGQPPRGAKPLIQDFSLTLRAGDRCLLVGSNGAGKTTILK
LLGGKHMVEPDMIRVLGRSAFHDTSLISSGLLCYLGGEWRRDVAFAGFDVPLQMDVSAEK
MIFGVQGIDPQRRANLIKVLGIDLKWRMHKVSDGQRRRVQICMGLLQSFQVLLLDEITVD
LDVLARADLLTFLKNECKDRGATIVYATHIFDGLADWPSHIAYVAHGKLQLALPLKEVDE
MKELSLMRTVEKWLRKEKEEKKKRQKERKAQGLPEFEDDIEGSRDAGDPARVPIRLLNNG
WAGGRLHSTLAGEDPYNI
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagagcgtgacgttggaggtaaaaaatctgagcttcacatatccaggctta
gatgggcaacccccacgtggagcaaagcctcttatacaggatttttctctcactctcagg
gctggtgatcgttgtcttctggtgggctcaaatggagcagggaagaccaccattttgaaa
ttactgggagggaagcacatggtcgaaccggacatgattcgagtcctggggagatctgcg
tttcatgacacttcattgatttcatctggccttctatgctatttgggaggagagtggaga
agagatgttgcatttgctggttttgatgtccccttacaaatggacgtttcagcagagaaa
atgatatttggggttcaaggcattgatcctcaaaggagagccaaccttataaaggtgctg
ggcattgatctaaaatggcggatgcacaaggtatcagatggccaaagaagacgtgtgcag
atttgtatgggtcttctacaatcctttcaggttcttcttttagatgagattacagttgac
ctagatgtacttgcaagggctgatctcttgacattcttaaagaacgaatgtaaagataga
ggagccacaattgtctatgctacacatatctttgatggcctcgctgattggccttcacac
attgcatatgttgcacatggaaaacttcagttagcattgccattaaaagaagttgatgaa
atgaaagagctctctcttatgagaacagtagagaaatggctaaggaaagagaaagaagag
aaaaagaagcgtcaaaaggagagaaaggcccaaggtctcccagagtttgaagatgatatt
gaaggcagtcgtgatgctggggatccagccagggttcctattcgactactgaataatggt
tgggctggagggagacttcattccactctggctggtgaagatccttataatatttag
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