Cryptomeria japonica (Japanese cedar): 131075647
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Entry
131075647 CDS
T10556
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131075647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjf03041
]
131075647
Spliceosome [BR:
cjf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
131075647
Complex C
U5 SnRNP specific factors
131075647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
131075647
NCBI-ProteinID:
XP_057868464
LinkDB
All DBs
Position
10:430765677..430809341
Genome browser
AA seq
1002 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIDSDEESDGEEDERMQEREDEEEGGNEGDGEEAWLTRGGADGPE
RGLGEGEGDDFDMDMKTDMEGQIVLAEDKKYYPTAEEVYGQGVETLVMDEDAQPLEQPII
KPVRNIKFEVGVKDSSTYVSTDFLLGLMSNPTLVRNVALVGHIQHGKTMFMDMLVEQTHH
ISTFDVHSEKHMRYTDTRIDEQERQISIKAVPMSLVLEDSNAKSYLCNVMDSPGHVNFSD
EMTAALALADGAVLVVDAAEGIMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPTD
AYHKLKHTLEDINHLITTFSTGAGGSQLVDPIIGNVCFASATAGWSFTLQSFAKIYVKLY
GVPFDATRFASRLWGDMYFHPDTRAFKKKPPSTGGERSFVQFILEPLYKIYSQVIGEHRK
SVETTLAELGVTLSNAAYKRNVRPLLRLACSSIFGSATGFTDMLVQHIPSAKDAAAKKIE
HIYTGPQDTSIAQAMKNCDPGGPLMVNVTKLYPKADCSVFDSFGRVYSGTIQTGQTVRVL
GEGYSPDDEEDMAIKEVTKLWVYQARYRIPISKAPAGSWVLIEGVDASIMKTATLCPEYL
DEDVFIFHPLRFNTLSVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTIL
GTGEIYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMLAE
PLEKGLAEDIENGVVSIDWPRKKLGDFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTL
PSEVDKSLLNSVKDSIVQGFQWGAREGPLCDEPIRNVKFKILDATIAQEPLHRGGGQIIP
TARRVAYSAFLMASPRLMEPVYYVEIQTPADCISAIYTVLSRRRGHVTADEAKPGTPSYI
VKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWSIVPGDPLDKSVVLRPLEPAPVQHLA
REFMVKTRRRKGMSEDVSINKFFDDPMLLEMARQDADFQQIL
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggacgacagcttgtatgacgaatttgggaactacataggtccggagatcgactctgac
gaagagtccgatggagaagaagatgagcgaatgcaggagcgcgaggacgaggaagagggt
ggcaacgagggcgatggcgaagaggcctggcttactcgcggcggcgctgacggtcctgag
cgcggcctcggggagggcgagggcgacgactttgatatggatatgaagacagacatggaa
gggcaaatcgttcttgcagaggacaagaaatactaccccactgcggaagaagtgtatggc
caaggcgtggaaaccctggtgatggacgaggatgcccagccgctggagcagcccattatc
aagcccgtcagaaacattaagttcgaggtgggcgtcaaggactcttccacctacgtctcc
actgatttcttgcttggcttaatgtcgaaccccacgctggtgagaaatgttgctctggtg
ggacacatccagcacggcaagacaatgttcatggacatgctagtggagcagacccatcac
atttctacttttgatgttcacagcgagaagcatatgaggtacaccgacactcggattgac
gagcaggaacgccagatttctatcaaggcggttcccatgtcgcttgttttggaggacagt
aatgccaaatcctacctctgcaatgtcatggattcccccggccatgttaacttttccgac
gagatgacagccgctcttgcgcttgccgatggcgctgtgctagttgtcgatgctgcggag
ggtatcatggtcaataccgaaagggctattcgccatgctatacaagaaaggcttccaata
gttgtcgttatcaacaaggtggatagattgatcacagagctaaaattgccaccgacagat
gcttatcacaagctgaagcacactttagaagatatcaatcacttgattactacattctca
actggagcagggggctcccaattagttgatccgattattgggaatgtttgttttgctagt
gccactgcagggtggtctttcaccttacaatcatttgctaagatttatgtaaaactctat
ggagttccatttgatgcaacccgttttgcatcccgtttgtggggagatatgtattttcat
ccagatactagagccttcaaaaagaaacctccctcaacaggaggtgagaggtcatttgtg
cagttcattcttgaaccgctatataaaatttacagccaagtgattggtgaacacaggaag
agtgtggagactactctagcagagttaggtgtgacacttagcaatgcagcatacaaacgt
aatgtaaggccattgctgagattggcttgcagttctatatttgggtctgcaactggattc
acagatatgctagtccaacatattccttctgcaaaggatgctgcagctaaaaagatagag
catatatacacaggtccacaagacacatcaattgcccaagctatgaaaaactgtgatcct
ggtggtcctcttatggtcaatgtaaccaaattatacccaaaagctgattgcagtgttttt
gattcttttggtagggtgtatagtggtactatacaaacaggtcaaactgtacgagtattg
ggagagggatattctcctgatgatgaggaggacatggccatcaaagaagtgactaaatta
tgggtatatcaagctcgatatcgaatacctataagcaaagcgcctgctgggtcctgggtt
ttgatagagggtgtggatgcttcaattatgaagacagcaacactctgtcctgagtatctt
gatgaagatgtttttattttccatccattacggtttaacacattatcagttgtgaaaaca
gcaactgaacctttgaatccaagtgaattgccaaagatggtagaagggcttcgtaaaatc
agtaagagttatcccttagccataacaaaggtggaggagtcaggtgaacatactattttg
ggtactggggagatctatttggactctatcatgaaggacctaagggaactttattcagaa
gttgaagtaaaggtggccgatcctgtagtttccttctgtgaaactgtggttgagtcatct
tcaatgaaatgttttgcagaaacacctaacaagaaaaataagattaccatgctagcagaa
ccacttgaaaaaggtttggcagaggatatagaaaatggcgtcgtaagcatagattggcca
aggaagaagttgggtgattttttccagaccaaatatgattgggatttgcttgcggctcgt
tcgatatgggcatttggaccagataagcagggtccaaacatacttctagatgacacactt
ccgagtgaagttgacaaaagcttgctgaattccgtgaaggactcaattgtgcaaggattc
cagtggggtgctcgagagggacctctgtgtgatgaacccattcgtaatgtcaaattcaaa
attctggatgcaacaatagcacaagagcctttgcatcgtggtggtggtcagataattcct
actgctagacgagttgcttattctgcttttctaatggcaagcccacgtttaatggagcca
gtgtattatgtagagatccaaactcccgccgactgtatttctgcaatctatacggtgctg
tcccgtaggcgagggcatgtcacagctgacgaagcaaagcccggaacaccatcgtatatt
gtaaaggcttttttaccagttatagaatcgtttggttttgagacagatttaagataccat
acacaggggcaagcattttgtctttctgtctttgatcactggtctatagtgcctggagat
ccactagataagtctgttgtattgcgaccattggagcctgcacctgtccagcatcttgca
cgtgagtttatggtgaaaactagacggagaaagggtatgagcgaggatgtgagcattaac
aagtttttcgatgatcctatgttgcttgaaatggcaagacaagatgctgattttcagcag
atcttgtag
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