Kaistella jeonii: NCTC13459_00590
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Entry
NCTC13459_00590 CDS
T06863
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cjg
Kaistella jeonii
Pathway
cjg03030
DNA replication
cjg03410
Base excision repair
cjg03420
Nucleotide excision repair
cjg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cjg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC13459_00590 (ligA)
03410 Base excision repair
NCTC13459_00590 (ligA)
03420 Nucleotide excision repair
NCTC13459_00590 (ligA)
03430 Mismatch repair
NCTC13459_00590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cjg03032
]
NCTC13459_00590 (ligA)
03400 DNA repair and recombination proteins [BR:
cjg03400
]
NCTC13459_00590 (ligA)
Enzymes [BR:
cjg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC13459_00590 (ligA)
DNA replication proteins [BR:
cjg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC13459_00590 (ligA)
DNA repair and recombination proteins [BR:
cjg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC13459_00590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC13459_00590 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC13459_00590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC13459_00590 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
HHH_3
5_3_exonuc
BRCT_2
DUF7575
Zn_ribbon_3
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
VEI95001
LinkDB
All DBs
Position
1:complement(649642..651648)
Genome browser
AA seq
668 aa
AA seq
DB search
MPENIQQKIEDLRTELHQHNYDYYILDEAAISDFEFDLKLKELQELEKNHPELYDPNSPT
LRVGGEITKNFPTIQHQFRMYSLDNSYDFDDLEDWEKRIIKTIDEPVEFVAELKYDGASI
SILYENGKLRQGVTRGDGFQGDEITANVKTISDIPLTLHGDFPTQFFMRGEIYLTRKNFN
KINLRREEEGLDLFMNPRNTASGSLKMQDSAEVRKRGLSAVLYQFISSEIPAETHWELLQ
NSRKWGFKVSDQAKLCRNLDEIKDFITYWDEHRHELPFEIDGIVLKVNSIKQQSQLGYTA
KSPRWAMAYKFKAEKVETELLTVAYQVGRTGAITPVANLRPVLLAGTIVKRASLHNEDII
KKLGLHEHDFVYVEKGGEIIPKIVGINEEKRKVDSREVEYITHCPECGTELVRIEDQAIH
FCPNDLHCPPQVVGRMIHYVSRKALDIEGLGAETIEQLYREKLVENPADFYVLTKEQLLP
LERMAEKSAQNILDGVEKSKKIPFEKVLFGIGIKHVGETVAKKLAKNFDSIESLQNATAE
ELIQVEDIGGKIAESIVEFFQNPENLLMIERLKSYGVQLERGENPNETLSDILQDKTFLF
TGKLSLFTREAAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIRTIIILDEQE
FLTLIAAE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaaacatccagcaaaaaatagaagatcttcgtacagaactccatcagcataat
tatgattattatattttagatgaggctgctatttctgattttgaattcgatttaaaatta
aaagaacttcaggagctcgaaaaaaaccatcccgaattatatgatcccaactctcctact
ttacgggttggtggcgaaataacgaaaaactttccgacgattcaacatcagttcagaatg
tattctttggataattcttacgattttgatgatcttgaagattgggaaaaacgcatcatc
aaaaccattgatgaacctgtagaatttgttgctgaactaaaatatgacggagcatcaatt
tcgattctttatgaaaatggaaaactgagacaaggagtaacgcgtggcgacggttttcag
ggagatgaaattacagcaaatgttaaaacgatttcagatattcccttaaccttgcatggt
gattttccgactcagtttttcatgcgtggcgaaatttatctgactcggaaaaactttaat
aaaattaatctccgtcgtgaagaagaaggtttagatctctttatgaatccaagaaacaca
gcttctggaagtttgaaaatgcaggattctgccgaagttcgaaaacgtggactttctgcg
gttctttatcaatttatctcttctgaaattcccgcagaaacgcattgggaactattacaa
aattctagaaaatggggttttaaagtttctgatcaggcaaaattgtgcaggaatttagat
gaaataaaagattttatcacttattgggatgaacatcgacacgaacttccgtttgaaatt
gatggaattgttttaaaagtaaactccattaaacagcaatcgcaattaggttatacagcg
aaatctccgcgttgggcaatggcatataaattcaaagcagaaaaagtagaaaccgaattg
ctaaccgttgcttaccaggtgggaagaacaggcgcaattacaccggttgcgaatcttaga
ccggttttattagctggaacaatcgttaaaagggcaagtttacataatgaagacattatt
aaaaaacttggtttgcacgaacatgattttgtttatgtagaaaaaggcggcgaaattatt
ccgaaaattgtcgggatcaatgaagagaaaagaaaagtcgatagcagagaagtcgagtac
ataacgcactgtccggaatgcggaacagaactggtgagaattgaggatcaggcaattcat
ttttgtccgaatgatttgcattgtccgccgcaagttgtgggtagaatgatccattatgtt
tcaagaaaagccttagacattgaaggtttgggtgccgaaacaattgagcagttgtatcgg
gagaaactggttgagaatccggcagatttttatgttttaacaaaagaacaattacttcct
ttagaaagaatggctgaaaaatctgcccagaatattttggatggcgttgagaaatcaaaa
aaaattcccttcgaaaaagtattatttgggatcggtattaaacacgttggtgaaacggtt
gcgaagaaattggcgaaaaatttcgactcgattgagagtttgcaaaatgcaactgcagaa
gaactcattcaggttgaagatattggaggaaagatcgccgaaagcattgttgaattcttt
cagaatcccgagaatttattgatgatcgaaagattgaaatcttatggcgttcaattggaa
agaggagaaaaccctaatgaaactttaagtgatattctacaggataaaacctttctcttc
acaggaaaactttccttgtttacacgggaagctgctgaagaaatggttgaaaaacatggc
ggaaaaaatatatccgcagtttctaagaatctgaattacttagtagtgggagaaaaagcc
ggcagcaaactcaaaaaagcgcaggatattagaacgatcatcatccttgacgagcaagaa
tttttaacgctgattgctgcagaataa
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