Campylobacter jejuni subsp. jejuni IA3902: CJSA_0554
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Entry
CJSA_0554 CDS
T01854
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cji
Campylobacter jejuni subsp. jejuni IA3902
Pathway
cji03030
DNA replication
cji03410
Base excision repair
cji03420
Nucleotide excision repair
cji03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cji00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CJSA_0554 (ligA)
03410 Base excision repair
CJSA_0554 (ligA)
03420 Nucleotide excision repair
CJSA_0554 (ligA)
03430 Mismatch repair
CJSA_0554 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cji03032
]
CJSA_0554 (ligA)
03400 DNA repair and recombination proteins [BR:
cji03400
]
CJSA_0554 (ligA)
Enzymes [BR:
cji01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CJSA_0554 (ligA)
DNA replication proteins [BR:
cji03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CJSA_0554 (ligA)
DNA repair and recombination proteins [BR:
cji03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CJSA_0554 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CJSA_0554 (ligA)
MMR (mismatch excision repair)
DNA ligase
CJSA_0554 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CJSA_0554 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
BRCT_2
RPA_interact_C
Motif
Other DBs
NCBI-ProteinID:
ADC28199
LinkDB
All DBs
Position
549999..551942
Genome browser
AA seq
647 aa
AA seq
DB search
MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEISKDSPTQKI
APTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENG
KLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIRGEVVILKDDFEKINEKRALL
NQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTKHSEVMQFIRELGFLK
DDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAF
KFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARLDVKIND
FVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDEGTLIKCQNIDCEDRL
VNSIIHFVSKKCLNIDGLGENIVELLYKHKKITTLESIFHLKFNDFEGLEGFKEKKINNL
LNAIEQARECELFRFITALGIEHIGEVAAKKLSLSFGKEWYKQSFEAYANLEGFGEQMAL
SLCEFTRVNRTRIDEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSRPRDEFKALIEKL
GGKVSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaagagtatttagaaaaagttgctttagctaatttgtggatgagggcatat
tatgaaaaagatgaacccttggctagcgatgaagaatacgatgctttaatcagagaatta
agagtttttgaagaacaaaataaagatgaaatttcaaaagactctccaacgcaaaaaata
gctcctactatacaaagtgagtttaaaaaaatagctcatttaaagcgtatgtggtcgatg
gaagatgtgtttgatgagagtgagcttagagcttgggcaaaacgcgcaaaatgtgaaaaa
aacttttttatagagcctaaatttgatggagcgagtttaaatttgctttatgaaaatggt
aaattagtaagcggcgccactaggggcgatggcgaagtgggtgaggatataacgcttaat
gtttttgagatagaaaatatacctaaaaatatagcctataaagaaaggatagaaattcgt
ggagaagtggtgattttaaaagatgattttgagaaaatcaacgaaaaaagagccctttta
aatcaaagtttatttgccaatccacgcaatgctgcaagtgggagtttaaggcagcttgat
acaagcatcactaaagaaagaaatttgaaattttatccttggggagtaggggaaaatacc
ttaaatttcaccaaacacagcgaggtgatgcaatttatcagagagcttggttttttaaag
gatgattttgtaagactttgcgctaatttagacgaagttttgaaagcttatgatgagctt
ttagctctaagagaaaaaaaacctatgatgatggatggaatggtggtaagagttgatgat
cttgcactttgtgaagaattaggctatacggtaaaatttccaaaatttatggcagctttt
aaatttcctgcgcttgaaaaaaccacgcgtttaataggggtaaatttacaagtaggaaga
agtggagtgatcactcctgtggcagttttagaacctgtaaatttagatggggttgtagta
aaatcagccacccttcataattttgatgaaattgcaagacttgatgttaaaatcaatgat
tttgtaagcgtgataagaagtggcgatgttatccctaaaatcactaaggtttttaaagag
cgtagagaaggtttagagatggaaatttcacgccctaagctttgtcctacttgccaaagt
gagcttttggatgaaggaactttaataaaatgtcaaaatatagattgtgaagatagactt
gtaaattctatcattcattttgtttctaaaaaatgtcttaatatcgacggactgggagaa
aatatagtagaacttttatacaagcacaaaaaaatcactacgcttgagagtatttttcat
ttaaaatttaatgattttgaaggtttggaaggctttaaagaaaagaaaattaacaatctt
ttaaatgccatagaacaagcaagagaatgtgagctttttcgttttatcacagctttagga
atagagcatattggcgaggttgcggctaaaaaattaagtttaagttttggtaaagagtgg
tacaagcaaagctttgaagcttatgccaatttagaaggttttggagagcaaatggcttta
agtctttgcgaatttacgcgtgttaatcgcacaagaattgatgagttttacaagctttta
aatttgaaaatagaaaaacttgaaatcaaaagcgatggtgtgatttttggtaaaactttt
gtgattacaggcactctttcacgcccaagagatgagtttaaggctttgatagaaaagctt
gggggtaaggtaagcggctcggtttctaaaaagactgactatgtgctttttggagaagag
gcaggttctaagcttagtaaggctaaagagcttgaagtaaaatgtatagatgaaagtgct
tttaatgagcttgttaaagaatag
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