Campylobacter jejuni subsp. jejuni ICDCCJ07001: ICDCCJ07001_534
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Entry
ICDCCJ07001_534 CDS
T01372
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cjn
Campylobacter jejuni subsp. jejuni ICDCCJ07001
Pathway
cjn03030
DNA replication
cjn03410
Base excision repair
cjn03420
Nucleotide excision repair
cjn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cjn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ICDCCJ07001_534
03410 Base excision repair
ICDCCJ07001_534
03420 Nucleotide excision repair
ICDCCJ07001_534
03430 Mismatch repair
ICDCCJ07001_534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cjn03032
]
ICDCCJ07001_534
03400 DNA repair and recombination proteins [BR:
cjn03400
]
ICDCCJ07001_534
Enzymes [BR:
cjn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ICDCCJ07001_534
DNA replication proteins [BR:
cjn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ICDCCJ07001_534
DNA repair and recombination proteins [BR:
cjn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ICDCCJ07001_534
NER (nucleotide excision repair)
GGR (global genome repair) factors
ICDCCJ07001_534
MMR (mismatch excision repair)
DNA ligase
ICDCCJ07001_534
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ICDCCJ07001_534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
Nlig-Ia
RPA_interact_C
Motif
Other DBs
NCBI-ProteinID:
ADT65920
LinkDB
All DBs
Position
539799..541484
Genome browser
AA seq
561 aa
AA seq
DB search
MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDVLIRELRVFEEQNKDEISKDSPTQKI
APTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENG
KLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIRGEVVILKDDFEKINEKRALL
NQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTKHSDVMQFIRELGFLK
DDFIKLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAF
KFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARLDVKIND
FVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDEGTLIKCQNIDCEDRL
VNSIIHFVSKKCLNIDGLGENIVELLYKHKKITTLESIFHLKFSDFEGLEGFKEKKINNL
LNAIEQARECELFRFITALGIEHIGEVAAKKLSLSFGKEWHKQSFEAYANLEGFGEQMAL
SLCEFTRVNRTRIDEFYKLLN
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaagagtatttagaaaaagttgctttagccaatttgtggatgagggcatat
tatgaaaaagatgaacccttggctagcgatgaagaatacgatgttttaatcagagaatta
agagtttttgaagaacaaaataaagatgaaatttcaaaagactctccaacgcaaaaaata
gcccctactatacaaagcgagtttaaaaaaatagctcatttaaagcgtatgtggtcgatg
gaagatgtgtttgatgagagtgagcttagggcttgggcaaaacgcgcaaaatgtgaaaaa
aacttttttatagagcctaaatttgatggagcgagtttaaatttgctttatgaaaatggt
aaattagtaagcggtgccactaggggcgatggcgaagtgggtgaggatataacgcttaat
gtttttgagatagaaaatatacctaaaaatatagcctataaagaaaggatagaaattcgt
ggagaagtggtgattttaaaagatgattttgagaaaatcaacgaaaaaagagccctttta
aatcaaagtttatttgccaatccacgcaatgctgcaagcgggagtttaaggcagcttgat
acaagcatcactaaagaaagaaatttgaaattttatccttggggagtaggggaaaatacc
ttaaatttcaccaagcatagcgatgtgatgcaatttatcagagagcttggttttttaaaa
gatgattttattaagctttgtgctaatttagatgaggttttaaaagcttatgatgagctt
ttagctctaagagaaaaaaaacctatgatgatggatggaatggtggtaagagttgatgat
cttgcactttgtgaagaattaggctatacggtaaaatttccaaaatttatggcagctttt
aaatttcctgcacttgaaaaaaccacgcgtttaataggggtaaatttacaagtaggaaga
agtggagtgatcactcctgtggcggttttagaacctgtaaatttagatggggttgtggta
aaatcagccacccttcataattttgatgaaattgcaagacttgatgttaaaatcaatgat
tttgtaagcgtgataagaagtggtgatgttattcctaagatcactaaggtttttaaagag
cgtagagaaggtttagagatggaaatttcacgccctaaactttgtcctacttgccaaagt
gagcttttggatgaaggaactttaataaaatgtcaaaatatagattgtgaagatagactt
gtaaattctatcattcattttgtttctaaaaaatgtcttaatatcgacggacttggagaa
aatatagtagaacttttatacaagcacaaaaaaatcactacgcttgagagcatttttcat
ttaaaatttagtgattttgaaggtttagaaggctttaaagaaaagaaaatcaacaatctt
ttaaacgccatagaacaagcaagagaatgtgagctttttcgttttatcacagctttagga
atagagcatattggcgaggttgcggctaaaaaattaagtttaagttttggtaaagagtgg
cacaagcaaagctttgaagcttatgctaatttagaaggttttggagagcaaatggcttta
agtctttgcgaatttacgcgtgttaatcgtacaagaattgatgagttttacaagctttta
aattga
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