Coturnix japonica (Japanese quail): 107307952
Help
Entry
107307952 CDS
T04297
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
107307952 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjo03400
]
107307952 (LIG4)
Enzymes [BR:
cjo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107307952 (LIG4)
DNA repair and recombination proteins [BR:
cjo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
107307952 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
SKA1
Motif
Other DBs
NCBI-GeneID:
107307952
NCBI-ProteinID:
XP_015706934
LinkDB
All DBs
Position
1:126200644..126205061
Genome browser
AA seq
912 aa
AA seq
DB search
MASVPTSQPSPKRTVASHVPFADLCSTLERIQMCKSRPEKTKYFKDFLDSWRKFHSALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDALKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKRGRLTVEQVNELLDAIANNNAAKNKGLVKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMNNQVFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHSVFKSDIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMINDQKLGHESLSKRYKILNNVFTPVTGRIHVVHKKSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYNRKDPP
CNILCGTEKPEMYIEPCNSVIVQVKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
LDMLEHLRSRAEGKLASKHLYIDEYDEPQEKKRKTVPKVKKVIGIAEQFKAPDLSNVNKV
SNVFEDVEFCVMTGMGRYSKSELESRIAECGGSVVQNPGPDTYCVIVGAENVRVKNIIAS
NKYDVVKAEWLLQCFQSKMLVPWQPAFMIHMSPDTREHFAREYDCYGDSYTADTDVAQLK
EVFSRVKDNKKMPLDLIAELEERYSWSSCQQCMFRGNTIYVDYYAIINKPSTKIHGTRLS
IRALELRFYGAKVVPLLEEGVSHVLIGEDHSRVKEMKAIRRMFGKKFKIVSELWVTESVK
EGVLKNENQFLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgtacccacatctcaaccttctcctaaaagaacagtggcctcgcacgtgcct
tttgcagacctgtgttccaccctggagcgaatacagatgtgtaaatcccggccagagaaa
accaagtacttcaaggatttcttggattcctggaggaaattccacagtgctctccatcaa
aaagagaaagatgtcaccgattctttctatcctgctatgcggcttattcttccgcagctg
gaaagggaaaggatggcgtatggaattaaggaaaccatgcttgcaaagctgtacatcgag
ctgcttaatttaccaaaagatggaaaggatgctctgaaacttttaaattacagaacaccc
actggttcacgtggagatgctggagactttgctatgatcgcatactttgtgttaaaaccc
cgaagccctaagcgaggcaggttgactgtagagcaggtcaatgaactgctggatgctatt
gcaaacaacaatgctgctaagaacaagggactggtaaagaaaagccttcttcagttaatt
acccaaagcacagcacttgagcaaaagtggctcatccggatgattataaaggatctaaaa
cttggtgttagccaacaaacaatattttcaatttttcatcctgatgctgctgaactacac
aatgttacaacggacttggaaaaagtttgtaggcagctgcatgacccctctgtctcgctt
agtgatgtttctatcatgttattttctgcctttaagccaatgctcgctgctattgccgat
gtccagcaaattgagaagcagatgaataaccaggtattctacatagaaactaaactggat
ggcgaacgtatgcagatgcacaaagatggtgatgtgtataagtatttttccagaaatggg
tttgactatactcagcagtttggtgcttctccccttgatggctcattaacaccatttatt
catagtgtatttaaaagcgatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgaaacacaaacctttatgcaaaaaggaaacaaatttgacatcaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtgtttgatgtgttaatgataaatgatcag
aagttgggtcatgaatccctgagcaaaagatacaagatcttaaataatgtatttacccca
gtaacaggcaggatacatgttgtacataaaaaaagtgccaggacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaagggattatggtaaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagagtatgtc
aatgggctgatggatgagctagatcttcttattgttggtggatactggggaaaaggctca
cgtggtggaatgatgtctcactttctgtgtgctattgcagaaactccagctccaaatgaa
aaacctactgttttccactctatttgtcgtgttggctctggctacactatgaaggaatta
tatgatctgggtttgaaactggctaaacactggaagccttacaataggaaggaccctcct
tgtaacattttgtgtggcactgagaaacctgaaatgtacattgagccttgcaactctgtc
atagttcaggtcaaggcagctgagattgttaacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgaaaaaataagagaggacaaagaatggtatgaatgcatgact
ttggacatgctagaacatcttagaagcagagcagaagggaagctggcatccaagcaccta
tatattgatgaatatgatgagccgcaagagaagaaaaggaaaactgtaccaaaggtgaag
aaggtaattggaatagctgagcagtttaaagctcctgatctttctaatgtcaacaaagtt
tccaatgtgtttgaggatgtagaattttgtgttatgacaggaatgggaaggtactccaag
tctgaactggaaagcagaatagctgaatgtggtggcagtgtggtacagaaccctggacct
gacacttactgtgtcattgtaggagctgagaatgtcagagttaaaaacatcattgcttcc
aacaaatatgatgtggtgaaagcagagtggcttcttcagtgttttcagtccaaaatgctg
gtaccttggcagccagcctttatgattcacatgtctcctgacacaagagaacattttgct
cgtgagtatgattgctatggagacagctacacagcagatacagatgttgcacaactcaag
gaagtgttctcaagagtgaaggataataagaagatgcctttggacttgattgctgagtta
gaagagcggtattcatggagcagctgtcaacagtgtatgttcagaggaaacactatttat
gtggactactatgctataattaacaagcccagtaccaaaatccatggcacaagactatca
attagagctttggagctccgtttttatggtgcaaaagtagttcctcttcttgaggaaggt
gtgtcccatgttcttataggagaagatcattcccgggtaaaagagatgaaagctatcagg
agaatgtttgggaaaaaatttaaaatcgtgtcggagctgtgggtaacagagtcagttaag
gaaggggtcctaaagaatgaaaatcagttcttaatttaa
DBGET
integrated database retrieval system
