Coturnix japonica (Japanese quail): 107310038
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Entry
107310038 CDS
T04297
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cjo
Coturnix japonica (Japanese quail)
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cjo03036
]
107310038 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
cjo03400
]
107310038 (SMCHD1)
Chromosome and associated proteins [BR:
cjo03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
107310038 (SMCHD1)
DNA repair and recombination proteins [BR:
cjo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
107310038 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
107310038
NCBI-ProteinID:
XP_015710817
LinkDB
All DBs
Position
2:complement(91220009..91282132)
Genome browser
AA seq
2031 aa
AA seq
DB search
MAAAGGSRGARKATQLSPRGGGDRTICIFDRRREQADLDEKVLSYGKSNYRGFRSAVCQA
FGISLDENFVITTTSRKEITEDNFKELVQDGVTLYLLQSVDQTLVSATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATAQNTGIRSIQIKLLFDDSNGKPAVVVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAV
FFVGQSARVISKPADSQDVHELVLSKEDFEKKEKNKEAIYHGFIRNRKPSDSSHITNDDE
RFLQNLIMEERDKESFTAVIITGVQPDHMQYLKNYFHLWTRQLAHIYHYYVHGPKGNETN
AVTKGVKPFNNIDIEISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKALVDGDGI
VEGIIRYHPFLYDKETFPDDPCFPSRLNDDDDDEDCIVIEKGARGKRPIFECFWNGRLIP
YTTVEDFDWCAPPKKRGLAPVECYNRISGTLFTNDKFQVSTNKLTFMDLELKLKDKNTLF
TRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITTRTDLPSKRMQSPWTVYSS
IEWDGKIFRTGQLVKTIKTLPIFYGSIEKFFLYGDHDGDIFATGGEVQIALEPQALYAEM
KTIPISKLDRTVSEKAVKKYIEDEMARLPDKLSVTWPEGDELLPNETRLAGTPIGALRIE
ILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPAGNKEIISHISQHGGKWPYWFKKMEN
LQKLGNYTLKLQVVLNESNADTYAGRPLPSKTFKFTIVEGKAEKFSVGLLELPFRVGVPF
NIPLEFQDEFGHATRLTNDIKPILEASGLTLQYEELTAGANCIIKGVTAKGCVNSCQGKN
FNLKVTLPGLKEDTQIFKIRLQPGPPHQLKVKPDSEILKIENGTAFPFQVEVLDESGNIT
AQPKLIVHCKFSGAPNLPVYSVDCSNAGTNILTGPVIHVQNIKKDQMLKARIEIPSCKDV
LPVEKMIKLLPSSRVARLQVLSMNGQNAIQIKHQDEINWVAGDIMHNLLFQMYDEGEREI
HITPAMAEKIKVNWTPKINKEQLMQGLLPDVKVPTSVKDVRYCLISYLDDHVSLESAFTI
RPLPDEPKHIKCKLEGSNTLQLGEDLQGEIDVMITDQYGNQVQTVTSACISYLGVAGPGL
DKSNLQITWQESTSTMRVKGIRFKPCALGSKELCFAWREFSDFLRVNLTPGSPAKLQIMD
WPELEKPVAVINGRELLKPLVVQLCDQWGNPSPEPNVKISLIKSSNLKIVPSVYQHKTDD
NGTANLGVISIHAPRGEHTLQLRASYNKIALECPIITLNVLPDPDKPIRLNVKYDKSAFF
PAGGTFPDFMVSVLSEDDNIIKNINPARISMKMWKGLGSGNRASTDVTVFSCSKVKDDKE
DGFFYFRDKVIPERVGTYSIQFTFAMDKTNILSSDQIIVEVVPNDPVRLLPDPLPATPTV
SNVRAVTSRTLVKDLCLCIMDEYNNCTGADLVGRVIAKIKSPSEDDTEIPQFQGKISTIE
FPFDRGSAEINLVLAENSPGRDSTEYILVFEPDLPALKKPLEPYRLSFMFYNDFKKQQQM
ATLTRERDQLSQSIGVYRNWFDTTNQLVNEMKCQVKEAETRETHLKNELRKHQIELPQTN
TLQYVDSLIKKKMLDQDGLMKQPRRTCTLPNFPKGNQDILGKIAHLAQIEDNEAAKVISW
HLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWNKPLPHLRNGKICFRP
IGNPVFARDLLTFPDNVEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKIAHCPTLLTRE
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKLYSTFSGQIDLLQQYRAAVVKLDNVN
KDLDLQLKSLNTPEMLKKKQELAEQEKSLMIIEQKLGMTPSDKVSESLLQLTVLDMPDTP
IPPKRMRKETVKKLYSSEDWVSSSAKKQLQQQQPLQTPPSELNGSARKRKA
NT seq
6096 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcagccgcggagcccgcaaggcgacgcagttgtctccccgcgga
ggaggggatcggaccatctgtatcttcgaccggcgccgtgagcaggcggatctggacgag
aaagtgctcagctacggcaagagcaactaccgcggcttccgcagcgccgtgtgccaggca
tttggcatatctttggatgaaaactttgttatcaccacaacaagcaggaaagaaattaca
gaagacaacttcaaagaacttgttcaggatggagttactctgtatctgctacagtcagtt
gaccaaaccctggtttcagcaacaaaggagagaattgacttccttccccactatgataca
cttgtcaaaagtggcatgtatgaatactacgctagtgaagggcaaaatcctttgccattt
gctcttgctgagttgattgacaattctctatcagctacagctcaaaatacaggtattcga
agcatacagattaaattgttatttgatgactccaatggaaaaccagctgttgttgtgatc
gataatggaagaggaatgacttctaagcagcttaacaactgggcagtatatagattgtcc
aagtttacaaggcaaggtgactttgagagtgatcattcaggatatgttcgccctttgccg
gtgcctcgtagtttaaatagtgatatctcatattttggagttggaggtaaacaagcagta
ttcttcgttgggcagtctgccagggtgataagcaaacctgcagattctcaggatgtacat
gaacttgtcctttccaaagaggattttgaaaagaaagagaaaaacaaagaagcaatatat
catggattcattcgaaacagaaagccatctgactcttctcatatcacaaatgatgatgaa
agatttcttcagaatctaataatggaagagagggataaagagagtttcacagcagttatc
attacaggtgttcaaccagatcatatgcaatacctgaaaaactactttcatctttggaca
aggcagctggcacatatctatcactattatgtccatggaccaaagggaaatgaaactaat
gctgtcacaaaaggtgtaaagcctttcaacaacattgacattgagatttctatgtttgaa
aaaggaaaagtaccaaaaattgtcaatcttagagagataaaagatgatatgcagacactg
tatataaatactgcagcagatagttttgagtttaaagctcttgttgatggagatggtata
gtggaaggaataatcagataccatcctttcctgtatgataaagaaacatttccagacgac
ccatgttttccatcaagattaaacgatgatgatgatgacgaagactgcatagtaatagaa
aagggtgccagaggaaaaaggcctatttttgaatgtttttggaatggaagattaattcct
tacacaactgtggaagactttgactggtgtgctcctccaaagaagagaggactggcacca
gttgaatgctataacaggatttctggtacattgtttaccaatgataagtttcaggtcagc
acaaacaagctcactttcatggatctagagctgaaattaaaagacaagaatactctgttt
acaagaattttcaatggacaggagcagcgaatgaaaattgacagagaatttgctttgtgg
ctcaaagattgtcatgagaaatatgataaacagataaaattcacagtctttaaaggaata
actacgcgtactgacttgccatccaaaagaatgcagagcccttggacagtgtattcctca
atagagtgggatggaaaaatattcagaactgggcagctggtgaaaaccattaagactctt
ccaatattctatggaagtattgagaaattttttttgtatggagaccatgatggggatata
tttgccactggtggagaggttcaaattgctttggaacctcaggcattgtatgctgaaatg
aaaactattcctatctcaaaactagacagaacagtgtctgaaaaagctgttaaaaaatat
atagaggacgaaatggcaagacttccagacaaactgtcagtaacttggcctgaaggagat
gagttattgccaaatgaaacaaggttggctggtacaccaataggggcattaagaatagaa
attctgaacaaaaaaggagaagcaatgcaaaagcttccaggtacaagccatggaggttca
aagaaacttcttgttgaactcaaagtcattttacattcacctgcagggaataaagaaata
atttctcatataagtcagcatggaggcaaatggccatactggtttaaaaaaatggagaat
cttcagaaacttgggaactacactttgaagctacaggttgtcttaaatgaaagtaacgca
gacacttacgcaggaaggcctctgccatctaaaacatttaaatttactattgtagagggc
aaagcagagaaattttcagtgggtcttttggagcttccttttcgggttggagtacctttt
aatattcctttggaatttcaggatgagtttggtcacgcaacacggttgacaaatgacatt
aaaccaattcttgaagctagtggattgactttgcaatatgaagagttaactgcaggagca
aactgcatcattaagggtgtcactgctaaaggctgtgtaaatagttgccagggcaagaac
tttaatctgaaggttactcttcctggattgaaagaagacacgcaaatttttaaaataaga
ttgcagcctggccctccacatcagttgaaagtaaaaccagattcagaaattcttaagatt
gaaaatggtacagctttcccctttcaggtcgaagtattggatgaatcaggcaatataaca
gcacagccaaaactgatagttcattgcaagttttcaggtgctccaaacctacctgtatat
tctgtggactgcagtaatgctggaacaaacattttaactggtccagtcatacatgtacag
aatataaagaaagaccagatgctcaaagcaaggattgaaatacctagttgtaaagatgtg
ctgccagtggaaaagatgattaaacttcttccaagcagtcgcgttgcaaggctgcaggtc
ttgagtatgaatggacaaaatgctattcaaattaaacatcaggatgaaatcaactgggtt
gctggagatatcatgcacaaccttctattccaaatgtatgatgaaggagaaagggagata
cacataactccagctatggcagaaaaaattaaggttaactggacacccaaaattaacaaa
gaacagttgatgcaaggattgttacctgatgtgaaagtaccaacatcagtgaaagatgta
cgctactgtctaataagttatcttgatgatcacgtgtctttggagagtgcattcacaatc
aggccacttcctgatgaacccaagcacattaagtgcaaattagaaggatcaaacacacta
cagttgggggaagatctacagggtgaaattgatgtaatgataacagatcagtatggaaat
caggttcaaacagtgacatctgcgtgtataagttacctaggagttgcggggcctggactt
gataaatcaaatttgcaaataacctggcaggaaagtacatcaacaatgagagtcaaaggc
attcgatttaaaccgtgtgcacttggaagcaaggaactgtgctttgcttggcgcgaattt
tctgattttctccgagtaaatttaactccgggatcacctgctaaattacaaattatggat
tggccagagttagaaaagcctgttgcagtgattaatggcagagaactgctgaagcccctt
gttgttcaactgtgtgatcagtggggaaatccatctcctgaacctaatgtcaaaatcagc
cttataaagagtagcaacctgaagattgttccttcagtctaccaacataaaacagatgac
aatggtacggctaacctgggagttattagtattcatgcacctaggggagagcacacttta
cagcttagagcttcatacaacaaaattgcattagagtgtcctattattacgttaaatgtc
cttcctgatcctgacaagcccatccgcttgaatgttaaatatgacaaaagtgcttttttt
ccagctggaggcacctttcctgattttatggttagtgttctttctgaagatgacaatatt
atcaaaaatattaatccagcacgtatttctatgaaaatgtggaaaggactgggcagcgga
aatagggcatcaactgatgtcacagtgtttagctgtagtaaagtaaaggatgacaaggaa
gatggcttcttttatttcagggataaagtgattccagagagagtgggcacttacagtatc
cagtttacttttgcaatggataagacaaacattctcagcagtgaccagattatagttgaa
gttgtacctaatgacccagtccgcttgttacctgatcctttgccagctactccaacagtt
tccaatgttcgagcagtcactagccgtacactagtcaaggatttatgcctctgcataatg
gatgaatataacaattgcactggagctgacttagttggaagagtaatagcaaaaattaag
agccccagtgaagatgatacagagatcccacagtttcaggggaagatcagtacaattgag
ttcccatttgacagaggatcagctgaaattaacctagtgctggctgaaaacagtcctgga
agagatagtactgaatatattcttgtatttgagccagatctgccagctttgaagaaacct
ttggaaccataccgtctgtcatttatgttttacaatgatttcaagaagcagcaacagatg
gcaacgcttacaagggagagggaccaattgtctcagtccataggtgtttatagaaattgg
tttgatactactaatcagcttgtaaatgaaatgaaatgtcaggttaaagaagctgaaaca
agagaaactcacctgaagaatgaattgaggaaacaccaaattgaattaccacagacaaac
acacttcagtatgtggattctcttataaaaaaaaagatgttggatcaagatggactaatg
aaacagccaaggcggacttgtaccctcccaaactttccgaaaggcaaccaagatatttta
gggaagattgcacatttagcacaaattgaggataacgaagcagcaaaagttatctcttgg
catttagccagcgacatggactgtgtagtcacattgactactgaagctgctcgttctatt
tttgatgaaactcaaggtcgacagcaagtgttacctcttgattccatttacaagaagaca
ctccctgattggaacaagcctttacctcacttaagaaatggaaaaatctgcttcagaccc
attggaaatcctgtatttgccagagatctgttaacatttccagataatgtagagcattgt
caaacagtgtttgggatgcttttgggtgacactattatcatagataacttggatgctgca
aaccattacagaaaagaggttgtaaaaattgcacattgccctacattgctgactagggaa
ggggacaggattcgcagcaatggaaagtttggaggccttcagaacaaagctcctccaatg
gacaaactcagaggaatggtatttggagcacccgtgccaaaactctactctactttcagc
ggacagatagatcttcttcagcaataccgtgcagcagttgtgaaacttgataatgtgaat
aaagaccttgatttacagttgaaatcacttaacactccagaaatgctaaagaaaaaacag
gagcttgccgaacaagagaaaagcctcatgataatagaacagaaattgggtatgactccc
tcagataaagtctctgaatcgttacttcagcttacagtccttgatatgcctgacaccccc
atccctcccaaaagaatgcggaaagaaactgtaaaaaaattgtatagctcggaagactgg
gtttcctcttctgctaagaagcagctgcagcaacagcaaccactgcaaacaccaccttca
gaacttaatggaagtgcacgaaagagaaaggcatag
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