Corynebacterium kefirresidentii: I6I12_07650
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Entry
I6I12_07650 CDS
T07267
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ckf
Corynebacterium kefirresidentii
Pathway
ckf03030
DNA replication
ckf03410
Base excision repair
ckf03420
Nucleotide excision repair
ckf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ckf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6I12_07650 (ligA)
03410 Base excision repair
I6I12_07650 (ligA)
03420 Nucleotide excision repair
I6I12_07650 (ligA)
03430 Mismatch repair
I6I12_07650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ckf03032
]
I6I12_07650 (ligA)
03400 DNA repair and recombination proteins [BR:
ckf03400
]
I6I12_07650 (ligA)
Enzymes [BR:
ckf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I6I12_07650 (ligA)
DNA replication proteins [BR:
ckf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I6I12_07650 (ligA)
DNA repair and recombination proteins [BR:
ckf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I6I12_07650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I6I12_07650 (ligA)
MMR (mismatch excision repair)
DNA ligase
I6I12_07650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I6I12_07650 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
BRCT_2
HMBD
Motif
Other DBs
NCBI-ProteinID:
QQN47021
LinkDB
All DBs
Position
complement(1592560..1594620)
Genome browser
AA seq
686 aa
AA seq
DB search
MTNPVDLHREWNDLAQEVRRHRNLYYNGEPAIPDADFDALFQRLLALEEEHPELAVPDSP
TQQVGAAPSAGEDIEHLERMMSLDNVFSAGEMQDWLDRTPTKTYLTELKIDGLSIDLVYR
NGRLTTAATRGDGTVGEDITANARVIEDIPHELKGTDEYPVPELIEIRGEVYMRPEDFEE
INEERAADGKEKFANPRNAAAGGLRMKDRAEVKKRRLKMVCHGLGAREGFSPTSQHDAYK
AIAAWGLPVSPYTKQVYSAEQVQDEVAHWAEHRHDAIFEMDGLVVKVDDLGSQRALGATS
RAPRWAIAYKYPPEEVTTKLKGIEVGVGRTGRVTPFAIMEPVFVSGSTVSMATLHNQSEV
KRKGVLIGDTVIIRKAGEIIPEVLGPVREQRDGSEYEWAFPENCPACGTKLAPQKDGDAD
WRCPNTQSCPAQLSARLEYLASRKALDIEALGEKGAMDLIENGILVDESELFELTEEKLL
ASDVYTAKKDTKDKRTKKEGNVKVNTAGQNLLKNLDEVKGRDFWRVLVALSIRHVGPIAA
RALASRYGSMEKLRAAKTEELAEVDGVGMTIAQSFHDWFEVDWHRTIVDKWAAAGVAMEV
AVEDHKEQTLEGLTIVVTGSLENFTRDSAKEAIVSRGGKATGSVSKKTSYLVAGENAGSK
EDKARELEIPILNEAEFQQLLETGEA
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtgactaatccagttgatctgcaccgtgaatggaatgaccttgcgcaggaagtgcgccgc
caccgcaacctgtactacaacggtgagccggctattcccgacgccgactttgatgccctc
ttccaacgccttcttgcactcgaagaagaacatcctgagcttgccgtgcctgattcacct
acccagcaggtgggtgctgcaccgagcgccggtgaggatattgaacaccttgagcgcatg
atgagcttggacaatgtctttagcgctggcgagatgcaggattggctcgatagaacccca
acaaagacttatctgactgagctcaagattgatggcttgtctatcgatttggtctatcgc
aatgggcgcctgactaccgccgcgacccgtggcgatggcacagtgggcgaagacatcact
gctaatgcacgcgtgattgaagacattccgcatgagctcaaggggacagatgaatacccg
gtcccagagctgatcgagattcgcggcgaagtctatatgcgccccgaggattttgaagag
atcaatgaggagcgcgcggccgatggcaaggaaaagtttgctaacccgcgcaatgccgcg
gcaggtggactgcgcatgaaggatcgcgccgaggtgaaaaagcgccgcctgaaaatggtg
tgtcacgggctaggcgcgcgcgagggattttcacccacttcccaacatgatgcttataag
gcaattgcggcttgggggctgcccgtttccccatataccaagcaggtttactcggctgag
caggtccaggacgaggtggcacattgggcagaacaccgccacgatgccatctttgagatg
gatggactcgtcgtcaaggtagatgatttgggctcgcagcgcgcactgggtgcgacttcc
cgcgccccgcgctgggccattgcctataagtatccaccggaagaggtgactacaaagctt
aagggcattgaggtgggtgttgggcgtaccgggcgagtgaccccgtttgccattatggag
ccggtctttgtctccggttccacagtgtccatggctaccttgcataatcagtccgaggta
aagcgcaagggtgtgcttatcggggataccgtcatcattcgcaaggcgggcgagattatc
ccggaggtgctcggaccagtgcgcgagcagcgcgatggtagcgagtatgagtgggcattc
ccggagaactgtccggcatgcggcacgaagttggccccacaaaaagacggcgacgcggat
tggcggtgccccaatacccaatcgtgcccagcacagctttccgcgcgcttggagtatttg
gcctcgcgcaaggcactggacattgaggccctgggcgagaagggggcaatggacttaatt
gaaaatggtattctcgtcgacgaatcagagcttttcgagctcaccgaggaaaagctccta
gcctcggacgtctacacggcgaagaaggatacaaaggacaagcgcaccaaaaaagaagga
aatgtcaaggtcaatacggccggacagaacttgttaaagaatctggatgaggtcaaaggc
cgtgacttctggcgcgtcctggtcgcgctgtctattcgtcacgtgggaccaattgccgct
cgggcgctggcctcccgctatggatccatggaaaagctacgcgcagccaaaacggaggag
ctggcagaagtcgatggcgtgggtatgaccatcgcacaatctttccatgattggttcgaa
gtggactggcaccgcactatcgtggacaaatgggctgccgcaggggtggctatggaggta
gcggtggaagaccacaaggagcagactctagagggtctgaccatcgtggtgaccggcagt
ttggagaacttcacccgtgattccgcgaaagaagctattgtttctcgtggcggaaaggct
accggttcggtctcgaagaagacctcctatctcgtggctggcgaaaacgccggttcgaag
gaggataaagcccgtgagctggaaatcccgattctcaatgaagcggaattccagcagcta
ctagaaacaggtgaagcctaa
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