Caldicellulosiruptor acetigenus I77R1B: Calkr_1631
Help
Entry
Calkr_1631 CDS
T01356
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cki
Caldicellulosiruptor acetigenus I77R1B
Pathway
cki03030
DNA replication
cki03410
Base excision repair
cki03420
Nucleotide excision repair
cki03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Calkr_1631
03410 Base excision repair
Calkr_1631
03420 Nucleotide excision repair
Calkr_1631
03430 Mismatch repair
Calkr_1631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cki03032
]
Calkr_1631
03400 DNA repair and recombination proteins [BR:
cki03400
]
Calkr_1631
Enzymes [BR:
cki01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Calkr_1631
DNA replication proteins [BR:
cki03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Calkr_1631
DNA repair and recombination proteins [BR:
cki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Calkr_1631
NER (nucleotide excision repair)
GGR (global genome repair) factors
Calkr_1631
MMR (mismatch excision repair)
DNA ligase
Calkr_1631
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Calkr_1631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
RNA_pol_A_CTD
BRCT_2
RUBY_RBDX
HHH
RNA_ligase
Zn_ribbon_PADR1
RTT107_BRCT_5
SAM_EPH
HHH_8
GFRP
Mustang
Motif
Other DBs
NCBI-ProteinID:
ADQ41124
UniProt:
E4SA39
LinkDB
All DBs
Position
complement(1705016..1707037)
Genome browser
AA seq
673 aa
AA seq
DB search
MSEFIKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVFPDSPT
QRVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFDYVVEYKIDGLS
VALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDISIVVRGEVFMPKDEFIK
LNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKEIETHAEALEF
LKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAGATAK
SPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNMDYIR
QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPVCGADVIKFEDEVAYR
CTGVECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFERGLIKTPADIYYLKFEDLVNLE
RFGVKSTNNLLKAIQASKNRPLDRLIYALGIRHIGQKAAKTLAEHISSIDDLFTITEDQL
LSLPDFGEKMAKSVVTFFRQEQTRHLIERLKAAGVNTVSEKKAKSDILKGYTFVLTGALS
KYSRNEAKEILESLGAKVTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK
ASSREEVEKILME
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtttataaaaaagagaataagagaacttgttgatcttatcaattatcatgat
tataaatactatgttgaagataatccagaaattagcgactatgaatatgatatgttatat
cgtgagcttgttgagcttgaaaagcaataccctgaatatgtgtttccagattctcctact
caaagggttggtggaaaggtaaaagagggctttaaagaggttgtacatcgtgtgcctctt
ctttcactttcaaacgtgttcaatgaaggggaactttacgattttgacagaagactaaag
gaacttcttggtacatctaattttgactatgttgttgagtacaagattgacgggctttct
gttgcacttgagtatgaaaatggtctttttgtccgaggtgcaacccgtggggatgggaat
gtaggcgaggatgtaacagaaaacttaaagactataaggtctattccgctaaggctcaaa
gaggacatctcaatagttgtgcgcggcgaggtgttcatgccaaaggatgagtttataaag
ctcaaccaggaaagggaagagaatgaagaacctctttttgcaaatccacgaaatgcagcg
gcggggtcgcttcgtcagcttgacccaaaaataacagcccaaagaaagcttgatatattt
gtcttcaatgtccaatggtgtgaaaaagagattgaaacacatgcagaggcgcttgagttt
ttaaagcatcttggttttaaagtttcacctgactatgttgtttgcagggatattaaagaa
gcatttgaagctataaagaagattgaagaaaaaagggacttgcttccttttgagatagac
ggtgctgttgtaaagctgaaccagctaagactgagagatgttgcgggtgcgactgcaaag
tcgccaagatgggctgttgcttataaattcccgcctgaaaaaaaggagacaaagcttttg
gatattgaggtcaatgtgggacgaacaggtattcttacaccaacagcaattttagagcct
gttagaatttcaggttctgttgtttcaagggcaactcttcataacatggactatataagg
caaaaagacattagaattggcgacactgtgatagtgcagaaagctgcagagattattcct
gaggttgttgaggttgtgttttcaaaacgaacggggcaagaaagaatttttgagatgccc
aaaaaatgtcctgtttgcggagctgatgttataaaatttgaagatgaggttgcttacagg
tgcacaggtgttgaatgccctgctaaaagttacaggttaattttgcactttgtttcgcgc
gatgcgatggacatcgcaggcatgggcgaaatggttgtaaaaaccttgtttgaaagaggt
cttataaagactcctgcagatatttactatttgaagtttgaagacttggtaaatttagag
cgttttggcgtaaagtcgacaaataatttgttgaaagctatacaggcatctaaaaacaga
ccattagacaggctcatatacgcgcttggtatcaggcacattgggcaaaaagctgcaaaa
actcttgctgagcatatatcgtctatagatgacctttttactataacagaagatcagctt
ctaagtcttcctgactttggtgaaaagatggctaaaagcgttgtgacatttttcaggcag
gagcagacaagacacctaatagaaagattaaaagcagctggtgtcaatacagtttctgaa
aagaaagcaaaatcggatattttaaaaggctacacatttgttttgacaggggcactgtca
aagtatagcagaaatgaggcaaaagagattttagaaagtcttggagcaaaagtgacagaa
agtgtatctaaaaagacaacagctgtgattgtaggtcaggaccctggtagcaaatttaca
aaagctcagcagcttggtgttaagattttgaacgaagaggattttgaaaagttagtaaaa
gcttcatcccgcgaggaagtagaaaagattttaatggagtga
DBGET
integrated database retrieval system
