Clostridium kluyveri DSM 555: CKL_3482
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Entry
CKL_3482 CDS
T00564
Symbol
ligA1
Name
(GenBank) LigA1
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ckl
Clostridium kluyveri DSM 555
Pathway
ckl03030
DNA replication
ckl03410
Base excision repair
ckl03420
Nucleotide excision repair
ckl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ckl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKL_3482 (ligA1)
03410 Base excision repair
CKL_3482 (ligA1)
03420 Nucleotide excision repair
CKL_3482 (ligA1)
03430 Mismatch repair
CKL_3482 (ligA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ckl03032
]
CKL_3482 (ligA1)
03400 DNA repair and recombination proteins [BR:
ckl03400
]
CKL_3482 (ligA1)
Enzymes [BR:
ckl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CKL_3482 (ligA1)
DNA replication proteins [BR:
ckl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CKL_3482 (ligA1)
DNA repair and recombination proteins [BR:
ckl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CKL_3482 (ligA1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKL_3482 (ligA1)
MMR (mismatch excision repair)
DNA ligase
CKL_3482 (ligA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CKL_3482 (ligA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
HHH_5
RNA_ligase
DUF3502
Motif
Other DBs
NCBI-ProteinID:
EDK35473
UniProt:
A5N2X7
LinkDB
All DBs
Position
complement(3522445..3524436)
Genome browser
AA seq
663 aa
AA seq
DB search
MDIKKRIDELRKIIEYHNDKYYNQDDPEITDYEYDKLYVELRNLENSHPEYKIQSSPTQK
VGGTVKRELRKVKHDIPVVSLQDVFSKEEVYSFVEKITSEVTYPKFVVEKKIDGLTVVLR
YYNGELKEAITRGDGSIGESVFENILQVKSIPKHIPSKLNYLEIRGEIYMTNENFIKVNE
KQEEIGGKIFKNPRNLAAGTIRQLDTSIVKDRNLDIFIFNLEISEGKKFETHSETLEWLS
NQGFDVSPNFKICETADEVWNAILDIEESRWDLGYSIDGAVVKVDNLNDRISLGMTSKVP
KWTVAFKYPPEQKETVIEDIIVQVSRTGRLNPLALLRPVILANTTISKATLHNQDFIDSK
DIRIGDTVIIQKAGDIIPEIIRSIPEKRPDWAKKYIIPDVCPVCNSKTIREPDGVDTRCS
NPDCEAQSFRKIGYFVSKDAMNIVGFGQNTVEALMKDGYIKKISDIYILKNYKDALIEKG
IIGKEKSVNNLLNAIELSKDNDIDRLITGLGIRNVGKQSAKILAGNFKSMDELAGAAYEQ
LIELEDFGPTTVPDILEFFNSNAYIELIKKLKEAGVNTISKTLQKKIDNRFLGKTFVITG
TLPTMKRDEAAEIIQSFGGKVSGSVSKRTSFVLAGEEAGSKLTKAQQLGISIITEEDLKD
MIK
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
gtggatattaagaagagaatagatgagcttagaaaaataatagaatatcataacgacaaa
tactacaatcaggatgatccagaaataactgattatgaatatgataaattatacgttgaa
ttaagaaatttagaaaatagtcatccagagtataaaattcagagttcaccaactcagaag
gttggcggtacagtaaaaagggagttaagaaaagttaaacatgatattcctgtagtaagt
ttgcaagatgtattttcaaaagaagaagtatatagttttgttgaaaagataacatcagaa
gttacataccctaaatttgttgtagagaaaaaaattgatggattaacagttgtattgaga
tattataatggagaacttaaggaagctataacaaggggcgatggctcaattggggaatct
gtgtttgaaaatattctacaagtaaaatctataccaaaacatattccaagcaagttgaac
tatttagaaattcgcggcgagatatatatgactaatgaaaatttcataaaagttaatgag
aaacaggaagaaataggggggaagatatttaaaaatccgagaaatttagctgctggaact
atcaggcagttagataccagtattgtgaaggacagaaatttagatatatttatttttaat
ctggagatttcagagggaaagaaatttgagacacattcagaaaccttagagtggttatct
aaccaagggtttgatgttagtccaaattttaaaatatgtgaaactgcagatgaggtttgg
aacgctattttagatattgaagaaagtagatgggatttagggtactctattgacggagcc
gtagtaaaggtagacaatttaaatgacagaatatctttgggaatgacaagcaaggttcct
aaatggacagtggcatttaaatatcctccagaacaaaaggaaactgtcattgaggatata
atagttcaagtaagccgtacaggaaggctgaatccacttgcactattaaggcctgttata
ttagctaataccacaatatcaaaggctacattacataatcaagatttcatagattcaaag
gatattaggattggagatactgtaataattcaaaaagctggagatattatacctgaaata
ataagaagtattcctgaaaaaagacccgattgggctaaaaaatacataatacctgatgtg
tgtcctgtatgtaattcaaagacaataagggaaccagatggcgttgatacacgatgtagt
aatccagattgtgaagcgcaatcatttaggaagataggatattttgtatccaaggatgca
atgaatatagttggatttggtcaaaatacagtagaagccttgatgaaagatggttatata
aagaaaatttcagatatatatatccttaagaattataaagatgcattaatagaaaagggt
ataataggaaaagaaaaatcagttaataatcttttaaatgcaatagagttatctaaagat
aatgatattgacagattaattacaggtcttggtataaggaatgtaggtaagcaatcggca
aaaatattagctggcaatttcaaaagtatggatgagcttgctggtgcagcatatgaacaa
ttaatcgaactggaggattttgggccaacaacagtacctgatatacttgaattttttaat
agtaatgcctacattgaacttattaaaaagctgaaagaggcaggtgtaaatactatatct
aagacattacaaaaaaagatagataatagatttttaggtaaaacatttgtaataacggga
acattaccaactatgaagagggacgaagctgctgaaataatacaatcatttggtggcaag
gtatctggaagtgtttcaaaaaggacatcctttgttttggcaggagaagaagctggaagc
aagctaacaaaggcgcaacaattaggaatatccataattacagaagaagacttaaaggat
atgattaaataa
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