Citrobacter koseri: CKO_00382
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Entry
CKO_00382 CDS
T00592
Name
(GenBank) hypothetical protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cko
Citrobacter koseri
Pathway
cko03030
DNA replication
cko03410
Base excision repair
cko03420
Nucleotide excision repair
cko03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKO_00382
03410 Base excision repair
CKO_00382
03420 Nucleotide excision repair
CKO_00382
03430 Mismatch repair
CKO_00382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cko03032
]
CKO_00382
03400 DNA repair and recombination proteins [BR:
cko03400
]
CKO_00382
Enzymes [BR:
cko01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CKO_00382
DNA replication proteins [BR:
cko03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CKO_00382
DNA repair and recombination proteins [BR:
cko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CKO_00382
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKO_00382
MMR (mismatch excision repair)
DNA ligase
CKO_00382
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CKO_00382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
Prok-E2_C
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ABV11545
UniProt:
A8ADI2
LinkDB
All DBs
Position
366300..368315
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPDLITPDSPSQ
RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSGDKLTWCCELKLDGLA
VSILYENGVLISAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSDRVTLCDSPEAVLDFYHKVEEDRPTLGFDIDGVVIKVNSMALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVEFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEA
ASIDELQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGIHWPAPIVVNADEIDSPFAG
KTIVLTGSLSLMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVI
DEAEMLRLLGV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaaccacgcttcgccatcatgagtat
ctttaccatgtgatggatgcgccggagatcccggacgctgagtatgaccgtctgatgcgc
gaacttcgtgagctggaagcgcagcatccagatttaattacgccggactccccgagccaa
cgcgtcggagcggcgccgctggcggcgttcagccagattcgccacgaagtgcccatgttg
tcgctggacaacgtgtttgatgaagagagttttctggcgtttaacaagcgcgtgcaggat
cggctaaaaagcggcgataaactgacctggtgctgcgagctgaagctggacggcctggcc
gtcagcatcctgtatgaaaacggcgtgctgatcagcgcggcaacgcgtggagatggaacg
accggcgaggacatcacctccaatgtgcgtaccattcgcgctattccgctgaagctgcgt
ggcgataacattccggcgcgtctggaggttcgtggcgaagttttcctgccgcaggccggg
tttgaaaaaattaatgaagaggcgcgccgcaccggtaataaagtatttgccaacccgcgt
aacgctgcggcggggtcgttgcgccagcttgatccgcgtattaccgcgaagcgaccgctc
actttcttttgctacggcgtcggcattctggaaggtggcgaactgcctgatacgcatctg
gggcgcttgctgcaatttaaagcctgggggcttccggtaagcgaccgggtgacgctgtgc
gactctcccgaagcggtgctggacttctatcacaaagtggaagaagaccgcccgacgctg
ggttttgacattgacggcgtggtgattaaagtcaactcgatggcgttgcaggaacagctt
ggattcgtcgcccgcgcgccgcgctgggcggtggcctttaagttcccggcgcaggagcaa
atgacgtttgtacgcgatgtagagttccaggtggggcggactggcgcgatcacgcccgtc
gcccgtctcgaaccggtgcatgttgcgggtgtgctggtcagcaacgccaccttgcacaac
gcggatgaaattgagcgtcttggcctgcgcattggcgacaaagtggtgattcgccgcgcg
ggggatgtgatcccgcaggtggtgaacgtggtgctttccgaacgcccggaagagacgcgc
ccggtcgagttcccgacgcattgcccggtgtgcggttctgatgttgagcgcgtggaaggc
gaagcggtcgctcgctgtaccggcggcctgatctgcggcgcgcagcgcaaagagtcgctc
aagcactttgtttcccgccgggcaatggacgttgacggcatgggcgataaaattatcgac
cagcttgtcgagaaagaatatgtccacaccccggcagatctgttccgtctgacggcaggc
aaactgacgggtctggatcgtatggggccgaaatcggcgcagaatgtggtgaatgcgctg
gaaaaagcgaaagagaccaccttcgcgcgattcctctatgcgctcggtatccgcgaagtg
ggcgaagccacggcggcagggctggcggcgtacttcggtacgttagaggcgctggaagcg
gcctctatcgacgaactgcaaaaagtgccggatgtcggcattgtggtcgctacgcacgtc
tttaacttctttgctgaagagagtaaccgggacgtgatcgggcagttactggcggaaggc
attcactggcctgcgccgatcgtggttaacgccgacgaaatcgacagcccgtttgccggt
aaaacgatcgtcctgacgggcagcctcagcctgatgtcgcgagatgatgcgaaagcgcgt
ctcgtggcgctgggggcaaaagtggcgggcagcgtatcgaaaaaaaccgatctggtaatt
gcgggcgaagcggcaggatctaagctggcgaaagcgcaggaactggggattgacgtgatc
gacgaagcagagatgctccgcctactgggtgtctga
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