Corynebacterium kroppenstedtii: ckrop_1256
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Entry
ckrop_1256 CDS
T00896
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ckp
Corynebacterium kroppenstedtii
Pathway
ckp03030
DNA replication
ckp03410
Base excision repair
ckp03420
Nucleotide excision repair
ckp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ckp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ckrop_1256
03410 Base excision repair
ckrop_1256
03420 Nucleotide excision repair
ckrop_1256
03430 Mismatch repair
ckrop_1256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ckp03032
]
ckrop_1256
03400 DNA repair and recombination proteins [BR:
ckp03400
]
ckrop_1256
Enzymes [BR:
ckp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ckrop_1256
DNA replication proteins [BR:
ckp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ckrop_1256
DNA repair and recombination proteins [BR:
ckp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ckrop_1256
NER (nucleotide excision repair)
GGR (global genome repair) factors
ckrop_1256
MMR (mismatch excision repair)
DNA ligase
ckrop_1256
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ckrop_1256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
Auto_anti-p27
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ACR18000
UniProt:
C4LJJ5
LinkDB
All DBs
Position
complement(1496004..1498064)
Genome browser
AA seq
686 aa
AA seq
DB search
MSTDLQAQWNSLAADVRHHRDLYYNSEPVISDAEFDHLFKTLQDLEADHPELAKNGSPTE
EVGAPVPTPTETSSAEVTFAPVRHIERLYSLDNVFSKSELLEWLHRTPAPTYLTELKIDG
LSIDLVYRDGELVSAATRGDGLTGEDITPNARTISDIPQTISPTDEYPVPELVEVRGEVF
IGVEEFAVINADRVEQGRKPFANPRNAAAGSLRQKNPAETAKRNLSMICHGIGAREGWEP
STQHDAYTALAAWGFRVSPYTKRVTSADEVIAQMEYWGEHRHDATHEMDGLVVKVDDLAE
QEDLGETSRAPRWAIAYKYPPEEVVTTLRDIRIGIGRTGRATTYAVLDPVLVAGSTVARA
TLHNPSEVHDKGVLIGDRVTIRKAGEVIPEVLGPVADARDGSEKPFVFSTVCPECGTPLV
QAKADDADWRCPNTQGCPGQLLARMTYLAGRSAFDIDALGVSGIQDLIRSGALTNESELF
DLDESHLRLTSVFTTKAGKINATGKALLKNLEEAKSTELWRVIVALSIRHVGPTAARALA
TKYGSLEAIRSASEEELARIDGVGSIIAASLCSWFAVDWHIKIVDAWAAAGVRMEDDKQQ
AQPQTLEGTTVVVTGTLEDFTRDSAKEAIISRGGRAAGSVSKKTNYVVVGANAGSKETKA
RDLGLRILDEDGFKELLETGRVSDPA
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaccgatcttcaagcacaatggaactcgcttgctgctgatgttcggcaccaccgt
gacctgtactacaacagtgagcccgtgatctcggatgccgaattcgatcaccttttcaag
accctccaagacctggaagcagaccatccggagctggccaagaatggttcaccgacggaa
gaggtgggcgcgcccgtcccgacccctaccgagaccagcagcgccgaagtaactttcgcc
ccggtacgtcacatcgagcggttgtacagcctggacaatgttttttcgaagtccgagttg
ctggagtggctgcatagaacccccgcgccgacgtacttgacggagttaaagatcgacggt
ttatccatcgacctggtgtatcgcgacggcgaactcgtgtccgccgcgactcgtggcgac
ggtctcaccggcgaagacatcaccccgaacgcccggacgatctcggatatcccccaaacg
atttctccgacggacgagtatcccgtgcccgagttggtggaagtgcgcggcgaagtgttc
attggtgtcgaagaattcgctgtgattaacgccgaccgcgtggagcaaggccggaagccc
tttgccaacccacgcaatgccgcagcgggatctctgcgtcaaaagaaccccgcggaaacc
gctaagcggaatctgtcgatgatctgccacgggatcggagcacgcgagggctgggagcct
tcgacccaacatgatgcgtacactgctttggccgcgtggggttttcgggtatccccgtac
accaagcgtgtgacctcggcagatgaggtcattgctcaaatggaatattggggcgagcac
cgtcacgacgcgacccacgaaatggacggtctagtcgtaaaagttgatgacctagctgag
caggaggatttgggcgagacctcgcgcgctccccggtgggctattgcctacaaatatccg
cccgaagaggtcgtgacgacgctgcgcgatattcgcatcggcatcggccggactggtcgc
gcgacgacgtacgccgtgctagatcccgtcctggtggctggctcaacggtcgctcgggcg
acgctacacaacccgtcggaggtccacgacaaaggtgtgttgatcggtgatagagtcacc
atccgcaaggctggcgaggtcattcccgaagtgctgggcccggtggcagatgcgcgtgat
gggtccgaaaagccgttcgtgttctctactgtctgccctgagtgtggcacgccgttggtg
caggccaaggcggatgacgccgattggagatgccctaatacacaagggtgccccggtcag
ttgctggctcggatgacgtatttggccggccggtctgctttcgatatcgatgctttgggc
gtgtcgggtatccaggacctcatcaggtcgggagctctgactaatgaatctgagctcttt
gacctcgatgaatcacatcttcgtttgacgtcggtgtttaccacgaaagcggggaagatc
aacgcgacggggaaggcgttgctgaaaaacctcgaggaagcgaagtccaccgagttatgg
cgggttatcgtggcgctttctattcgtcacgtgggccccacagctgctcgtgcgctggcc
acgaaatatggctctctcgaggccattcgcagcgcgtccgaggaggagctagctcgaatc
gatggagtcggcagcatcattgcggcgtcgttgtgctcatggtttgccgtcgattggcat
ataaaaattgtcgacgcctgggccgcggccggtgtccgcatggaggatgacaagcagcaa
gcccaaccgcagaccttggagggcacgaccgtcgtcgtcacgggtacgttggaagatttc
acgcgtgactcggcgaaggaagcgattatttcgcggggaggtcgcgcagcggggtcggtc
tccaagaaaacaaattatgttgtcgtcggggcgaatgctggatcgaaagagacgaaagcg
cgggacctcgggttgcgtattctcgacgaggacggttttaaagagcttttagaaacaggc
cgtgtgagtgaccctgcttaa
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