Chryseobacterium lactis: EG342_12245
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Entry
EG342_12245 CDS
T06580
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
clac
Chryseobacterium lactis
Pathway
clac03030
DNA replication
clac03410
Base excision repair
clac03420
Nucleotide excision repair
clac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EG342_12245 (ligA)
03410 Base excision repair
EG342_12245 (ligA)
03420 Nucleotide excision repair
EG342_12245 (ligA)
03430 Mismatch repair
EG342_12245 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clac03032
]
EG342_12245 (ligA)
03400 DNA repair and recombination proteins [BR:
clac03400
]
EG342_12245 (ligA)
Enzymes [BR:
clac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EG342_12245 (ligA)
DNA replication proteins [BR:
clac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EG342_12245 (ligA)
DNA repair and recombination proteins [BR:
clac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EG342_12245 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EG342_12245 (ligA)
MMR (mismatch excision repair)
DNA ligase
EG342_12245 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EG342_12245 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_lig_T4_1
DUF7575
Zn_ribbon_3
zf-IS66
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
AZA82609
UniProt:
A0A3G6RNE7
LinkDB
All DBs
Position
complement(2737426..2739432)
Genome browser
AA seq
668 aa
AA seq
DB search
MSENIQQKIEQLRKELHQHNENYYLLDTPTISDYDFDMLLEELQGLEASHPEFHDENSPT
MRVGGGITKVFPTIQHRFRMYSLDNSYDFDDLEDWEKRIIKTIDEPVEFVAELKYDGASI
SILYENGKLTQAVTRGDGFQGDEITPNVRTISDIPLTLKGDFPAQFFMRGEIYLTRKNFD
KLNKLREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSSVLYQFISEEIPAETHWELLQ
KAQSWGFKTSQQAKLCKTLDEVKEFITFWDTERHNLPFEIDGIVLKVNSLQQQRQLGYTA
KSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLRPVLLAGTIVKRASLHNEDII
KKLDLHEHDFVYVEKGGEIIPKIVGVNTDKRTEESKEIEYIKHCPECGTELVKIEDQAIH
FCPNELHCPPQVVGRMIHYVSRKALNIENLGSETIEQLYRERLIENPADFYVLTKEQLLP
LERMAEKSAQNIISGIEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFPTVDELKNATVE
ELCQVEDIGAKIAVSIVDFFQNSENILMIERLKSYGVQLEKGESTNEVLSNVLEGKAFLF
TGKLSLFTRESAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTIEILDEQQ
FLDLIEKH
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaacattcaacaaaaaatagaacagctcagaaaagagcttcaccagcataac
gaaaattattaccttctggatactcccaccatatctgattatgactttgatatgttactg
gaagagcttcagggtcttgaagccagccatcctgaatttcatgatgaaaactcaccgaca
atgcgtgtaggaggcggtatcaccaaagtttttccaacgattcagcatcggttcagaatg
tattctttagataattcatatgattttgatgatctggaagactgggaaaaaagaattatt
aaaacaattgacgagcctgtagaatttgttgccgagctgaagtatgacggtgcttctatc
tcaattctttatgaaaacggaaaactgacccaggcagtaacgcgtggagatggtttccag
ggagatgagattactcctaatgttcgtacgatttcggatattcctttaactttaaagggt
gatttccctgctcagttttttatgcgtggtgagatctatctgacgagaaaaaactttgac
aaacttaataaacttcgcgaagaagaaggccttgatcccttcatgaatccaagaaatacg
gcaagcggaagtttgaaaatgcaggacagtggtgaggtaagaaaacgtggattgtcttct
gtattgtatcagtttatttcagaagaaattcctgcagaaactcattgggaactgcttcag
aaggctcaaagctggggattcaaaacctctcagcaggcgaaattatgcaaaacactggat
gaggttaaagaatttatcacgttctgggatacagagcgtcacaatcttccttttgaaatt
gacgggattgttttaaaagtaaattcactgcaacagcaaagacaacttggatatacagca
aagtcgccacgttgggcaatggcttataaatttaaagctgaaaaagtagaaactgagctt
caaagtgtttcatatcaggtgggaagaacgggagctattacacctgttgccaacttaaga
cctgttttactggccggaactattgtaaaaagagcatctctacacaacgaagatatcatc
aaaaaactggatctgcatgagcatgattttgtgtatgtagaaaaagggggtgaaattatt
ccgaaaattgttggagtaaatacagataaaagaacggaggaaagcaaagaaatagaatac
atcaagcattgccccgaatgtggaactgaactggtgaaaattgaagaccaggcgatccat
ttctgccctaatgaacttcactgcccgccgcaggttgtgggaagaatgattcactatgtt
tccagaaaggctttgaatattgaaaacctcggaagtgaaacgattgagcagctttacaga
gaaagattaattgagaatcctgccgacttctatgttttaacgaaggaacagcttcttccg
ttggaaaggatggctgagaaatctgctcaaaatatcatctcgggaattgaaaaatcgaaa
gaaattccttttgaaaaagtattatatggaatcggaatcaagcatgtgggcgagaccgtt
gccaagaaactggtaaagaacttccctacggttgacgagttgaaaaatgccactgttgaa
gagctttgtcaggtagaagatatcggagctaaaatcgcggtaagcatcgttgatttcttc
caaaattcagaaaatattctgatgatcgaacgtttaaaatcttacggggttcagctggaa
aagggtgagagtaccaatgaggttttatctaatgttctggaaggaaaagcattccttttt
accggaaaattatcgctgttcacaagagaatcagcagaagagatggtggagaaacatggc
ggaaagaatatttctgcagtttccaaaaacctcaactatctggtggtaggtgaaaaagca
ggaagcaagctgaaaaaggctcaggatattggaactattgaaattctggatgagcaacaa
ttcctggatctgattgagaaacattaa
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