KEGG   Clavelina lepadiformis (light-bulb sea squirt): 143448357
Entry
143448357         CDS       T11416                                 
Name
(RefSeq) uncharacterized protein LOC143448357
  KO
K10260  F-box and WD-40 domain protein 7
Organism
clep  Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:clep00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    143448357
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:clep04131]
    143448357
   04121 Ubiquitin system [BR:clep04121]
    143448357
Membrane trafficking [BR:clep04131]
 Autophagy
  Mitophagy
   Other mitophagy associated  proteins
    143448357
Ubiquitin system [BR:clep04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     143448357
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40 Beta-prop_THOC3 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd WDR55 Beta-prop_SCAP WD40_Gbeta Beta-prop_CAF1B_HIR1 DSE1_N Beta-prop_WDR41 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML_2 Beta-prop_EML ANAPC4_WD40 F-box-like TRM82_WD Beta-prop_WDR90_POC16_2nd Beta-prop_NOL10_N Beta-prop_VPS8 F-box CFAP251_N WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_Nup120_160 Beta-prop_RIG_2nd Beta-prop_HPS5 PAC11 Beta-prop_NWD2_C Beta-prop_RSE1_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_LRRK2 WD40_like PALB2_WD40 Beta-prop_Vps41 DUF7899 Beta-prop_ACSF4 Beta-prop_IP5PC_F KNTC1_N
Other DBs
NCBI-GeneID: 143448357
NCBI-ProteinID: XP_076804174
LinkDB
Position
3:2106312..2108470
AA seq 493 aa
MSGHENDMKDILRKFTTLDRSGQDRVLKQLLLKCKPRQLQMLYSDTRQLLAVDFVPFIPR
EIVDRIFSYLTPEELSRASCCSTRWRERANSSSLWKALCRRRQWLHFGEGSSQPQELFTP
TPPTLAPQTTMTSPTFHPVLHTCKELPPICKWKDIFIRACHLHRNWAHGRYVVLPAMRGH
KDRITCMDCSGNILASGSDDRLVVLWDVSTGKLLHIFHHHSEAITCLKIKNNLLLTGCAD
GIIRIFNISTGKCLGHLLIENNDKSSVRCIEFDGSKAVSGYDDRTIKIWNVMSGKCLYVL
NGHTDDLVTLSCHGKYAVTSAWDETIRVWDTERGICVHTLLGHTEVVHCCKINDQYVVSG
GGDKVLKIWQMSSGDCTQTLVGHNDDVYCLDFNEEFIVSGSADSHVRIWNWLGACLHSVH
EHIGVVRCIKLRRDMMISSGDQKKIIVWDVKEGKLLNVVHRNPSLVNLMWVDDTKLITVS
PEAPGVVTVLSYW
NT seq 1482 nt   +upstreamnt  +downstreamnt
atgtccggccacgaaaacgacatgaaagacattctgaggaaattcacgaccttggataga
agcggccaggatcgtgtactgaagcaactactcttgaaatgcaaaccacgccaactgcaa
atgctctatagcgacaccagacagttgcttgccgtggactttgttccgttcattcctcgt
gaaatagtcgacagaatattttcatatctcactccggaggaactgtctcgtgcttcatgt
tgcagcacacggtggcgtgagagagctaattcaagcagtctctggaaggcgttgtgtcgc
cgacgacagtggcttcattttggagagggttcgtcacaaccccaagaactctttaccccg
acccccccaacattggccccccaaaccacgatgacatcccccacttttcaccctgtgtta
catacatgcaaggaattgcctccgatttgcaaatggaaggatattttcatccgtgcctgc
catttgcatcgtaattgggcgcatggacgctacgtggtcctccctgctatgcgaggacac
aaagacaggatcacgtgtatggattgctctggtaacatccttgcttctggcagtgatgac
cgcctggttgttctctgggatgtttcgactggaaagctacttcacatttttcaccatcac
tccgaggcaattacctgcttaaagataaaaaacaacttgctcctcactggttgtgcagat
ggtatcatcaggattttcaatatcagcaccggaaaatgtctgggacatttactgattgaa
aataatgacaagtcgtctgttcgttgcattgaatttgatggaagcaaagctgtgagtgga
tacgacgataggacaatcaaaatttggaacgtgatgagtggcaagtgcttgtacgtgttg
aacgggcacacggatgatcttgtcactttgagttgtcacggtaaatatgccgtaacatct
gcatgggacgaaacaatccgagtctgggacacagaacgtggcatctgcgtccacaccctg
cttggtcacacagaagttgttcattgctgcaaaataaacgaccagtacgtcgtcagtggt
ggtggggataaggttttaaaaatatggcaaatgtcaagtggcgactgcacgcagacctta
gtcggccataacgatgatgtttattgtctcgatttcaacgaagaatttatcgtgtctggg
tctgcagacagtcacgtgaggatttggaattggctcggtgcttgcttgcattcagtgcat
gaacacataggagtcgtccggtgcataaagttacggcgagatatgatgatttctagcggc
gaccagaagaagattattgtgtgggatgtcaaggaaggaaaattacttaacgtggtacat
cgcaacccgagcttagtcaatttaatgtgggttgacgacaccaagcttattactgtttca
ccggaagcgccgggcgtggttactgtgcttagttattggtaa

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