Caproicibacterium lactatifermentans: GJQ69_00950
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Entry
GJQ69_00950 CDS
T07898
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
clf
Caproicibacterium lactatifermentans
Pathway
clf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJQ69_00950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clf03019
]
GJQ69_00950
03400 DNA repair and recombination proteins [BR:
clf03400
]
GJQ69_00950
Enzymes [BR:
clf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GJQ69_00950
Messenger RNA biogenesis [BR:
clf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GJQ69_00950
DNA repair and recombination proteins [BR:
clf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GJQ69_00950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
Helicase_RecD
DUF4264
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QKN23181
UniProt:
A0A859DT49
LinkDB
All DBs
Position
complement(203370..206660)
Genome browser
AA seq
1096 aa
AA seq
DB search
MDFQNYFKVKVKEILGRLSGKKAIVFFEGFAPEQNQILLSGFDGLIQPSTVLEGKYLNIP
AISLQENKRKTMQKILTADNHVLVGVYEQYTAIASSLQDLYSGEIVIVVNNLFQQFYPCA
IAPETAKRLYQCFQKENPDIPDELKPYFDIYGDAEMVRETCLLSPVDRHTDEGITAVPFF
DSYSPKFLTQRMLESNCTLSVSSTDFSAHIADILSGQAYTPTTYIVDSENCDACQRLACW
VRLLDSLNLTYGIQLHSRFEQVSHTEDNKYLPLLQKYWGMDAKFRILQFYCDPHNSNETV
SVSQGHIVSTVIAQSEKALNGNHDFNNIFITAPTGAGKSLLFQLPAIYLSEKFDAVTIVV
TPLIALMDDQVKNLEAHHVFGATYLNSDITYEERQSRIEKIRDGKISIVYIAPEMLVANS
IESLIGERPIGLFVVDEAHIVTSWGKDFRADYWYLGDFLNGLRQAPAKGSMGPHKKALLF
PILCLTATAVYGGSEDVVNETIESLNLDNPLLFLGSVRRSNISFDINHIDRNEFTGGIDE
FKTKKAAERINSFVKKGERTLVYCPYIKQVENISVELESDAAIRNRVAVFHGKLNKDAKK
ISQERFRSGDCTAMVCTKAFGMGIDIKDIQNVYHYAPSGNLADYVQEIGRAARKPEIKGH
AIVDFLNSDLRYTRILYGLSGLKQYQLKEMLRKLYDIYSTRRHRYLLISPDTFSYLFEAE
NIENKVKCGLLLIAKDLVGKYGFPVIVVRPKSMMTKNYVNVPPATEQPFIEKYGAYAKKL
QDKTRRIVPSPKGSNIPPTIVTNSGKIYEIDMARLWEDNFSDLTFMNFKYQFFAGTLFQF
DNGEHLSARIRVTIHYNQDFQTVLKKFTDFLKALSEIFRAYKQKRTEFTIADFKADLGKI
MDLKTKQYGFPELLLNLFVKDVTENITLNNVGGKYRFIASHKATSGNGLVYRVLSYNYIT
MAENFGQLLNQCAPNDGITFESFFPAKQNESHRRLIDLLSMLELLKLASYEIKGGESLEI
FIRINDPLKVRQLAHGNYSNALLTDLHKRHESAQKVMMRFFEGNFSDDERWDIIENYFLG
REDIVDHLLSAGLKKE
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atggattttcaaaactactttaaagttaaggtaaaagaaattcttggtcgcttatcgggg
aaaaaagcaattgtattctttgagggctttgcgccggagcaaaaccaaattttactctcc
ggctttgatggcttgattcaaccctccacggttttggagggaaagtatctgaatattccg
gcgattagtctccaagaaaacaagcgtaagacaatgcaaaaaattctaactgccgacaat
catgttcttgtcggtgtttatgagcaatacacagctattgcgtcatcccttcaagacttg
tatagtggggaaattgtcattgtagtcaacaacctttttcagcagttttatccatgtgcc
attgccccagagactgcaaaaaggctgtatcaatgttttcagaaggagaatcctgatatt
cctgacgaactgaagccatacttcgacatttacggcgatgcagaaatggtcagagaaaca
tgccttttgtctcctgtagatcgtcacaccgacgaagggatcacagcggttccttttttc
gactcatattctccgaaatttctcacccaaaggatgctggaaagtaattgtaccctttct
gtttccagtaccgacttttctgcccatattgctgatatcctgagtggacaggcatacaca
ccaaccacttatattgtggatagcgaaaattgtgatgcctgtcagcgccttgcgtgttgg
gtacggcttcttgattctctaaatttaacttacggtatccagcttcactctagatttgaa
caagtcagtcatacggaagataataaataccttcctctactgcaaaaatattggggtatg
gatgcaaaatttcgcattttacagttttactgtgatcctcacaactcaaatgagacggtg
tcagtcagtcagggacacatcgtttccacggtaattgcgcagagtgaaaaagcccttaat
ggtaatcatgatttcaacaacatctttatcactgcgccgacaggagccggaaaatccctg
ctgtttcagttgcctgctatttacctttccgaaaaatttgatgccgttaccattgttgtg
acgccgttgattgctctgatggatgatcaagtcaaaaatctggaagcacaccatgttttc
ggcgctacttatctgaattccgatattacatatgaagagcggcagtcacgcatcgaaaaa
atcagggacggaaaaatatccattgtctatattgcgccggaaatgcttgttgccaattcc
atagaaagcctgattggcgagcgccctattggccttttcgtcgtggatgaagcgcatatt
gtcacttcctggggcaaagatttccgcgcagattactggtatctgggagacttcctcaat
ggacttcgccaggcgccggcaaaaggaagtatgggaccacataaaaaggctcttctgttt
ccgattctttgtttaactgcgacggctgtttacggcggttctgaggatgttgttaatgag
acgattgaaagtttgaaccttgataatccgcttctctttctcggcagtgtgcgccgcagc
aatatttctttcgatatcaatcacattgaccgaaatgaatttacaggcggtattgatgaa
ttcaaaacaaaaaaggcggcagagcgcatcaattcctttgtaaagaaaggggaaagaaca
cttgtgtactgtccttacatcaagcaagtcgaaaacatcagtgtagaattggaatcggat
gcagcaatccgaaaccgcgttgctgtatttcatggaaagttgaataaagacgcaaagaag
atcagccaggagcgttttcgcagcggtgactgtaccgccatggtctgcaccaaagcgttc
ggcatgggaatcgatatcaaagatattcaaaacgtttaccattatgcgccttccggcaat
cttgccgattatgtgcaggaaattgggcgcgctgcacgcaagccggaaatcaaaggccat
gccattgttgattttttgaacagtgaccttcgctacacgcgaattctttatggtctctct
ggattaaagcaataccagttaaaagaaatgctgcgaaagctctacgatatttatagtacc
cggaggcaccgttaccttcttatttcaccagacactttttcctacctttttgaggctgaa
aacatcgaaaataaagtaaagtgcggtcttctcctcattgcaaaagatttggttggaaaa
tatggcttcccggtcattgtcgttcgtcccaaatcgatgatgacgaaaaattatgtgaat
gttccacccgctacggaacagccgtttattgaaaaatacggtgcctatgcaaagaaattg
caggacaagactcgccggatcgttccatcaccgaaagggagcaacattcctcctacaatc
gtgaccaacagcggaaaaatctatgaaatcgacatggcgcgcctttgggaagacaatttt
tcagatctcacctttatgaatttcaagtatcaatttttcgccggcacattgtttcagttt
gacaatggcgaacatttgtccgcgcgtatccgcgtaacgatccattataatcaggatttt
cagactgttctaaagaagtttactgattttctgaaggctttgtccgaaatattcagagct
tacaagcaaaaaaggaccgagttcacaatagccgattttaaggctgatctcggaaaaatc
atggatctgaaaacgaaacagtacggattcccggagttgctgctgaatctgttcgttaaa
gacgttactgaaaatataactcttaacaatgttggcggaaaataccgttttatcgcttct
cacaaagcaacctcgggaaatggattggtatatcgcgtactcagttacaactatatcacc
atggcggaaaatttcggacaactgctgaaccagtgcgcgcctaatgatggtatcaccttc
gagtcctttttcccggctaaacaaaatgaaagccacaggagattaatcgatctactttcc
atgctggaattattgaagctcgcttcttatgagatcaaaggcggagaaagccttgaaatc
tttataaggatcaatgatccgctcaaggtgaggcagcttgcacatggcaattattccaat
gcactgctgactgatttacataagcgccacgagtctgcacaaaaggttatgatgcggttt
tttgaaggcaatttttcagacgacgaacgctgggatatcattgagaattattttcttggt
agagaggatatcgttgaccacctgctttcagctggtctgaaaaaagaataa
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