Caproicibacterium lactatifermentans: GJQ69_02790
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Entry
GJQ69_02790 CDS
T07898
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
clf
Caproicibacterium lactatifermentans
Pathway
clf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJQ69_02790 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clf03019
]
GJQ69_02790 (rnr)
03016 Transfer RNA biogenesis [BR:
clf03016
]
GJQ69_02790 (rnr)
Enzymes [BR:
clf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GJQ69_02790 (rnr)
Messenger RNA biogenesis [BR:
clf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GJQ69_02790 (rnr)
Transfer RNA biogenesis [BR:
clf03016
]
Prokaryotic type
tRNA degradation factors
GJQ69_02790 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
OB_RNB
RNase_II_C_S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QKN23505
UniProt:
A0A859DPY2
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All DBs
Position
584864..587005
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AA seq
713 aa
AA seq
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MVEDIKKGILEALQSAGEDLSSRFLMRKLGIPEKYSTTFYTALNQLRREKKISVNSRHIV
RLHGDPTQRIPATIVSLSRSFAFARPDDGGDDMFLHGEDLHDAFLGDSVVLGNVRQSPKG
SSCEVLEITQRAGNTVNGTIVRSPYGVELHPDAAIRFDIPIADFAHCGAEVGDKVQADIS
RLPHSSRFSAKVVKNYGHADCAKICADAILDANSVKVPFSPEALAEAEAIGSRPITEADM
QGRADYRGWPICSIDSASAKDLDDAISIVRTPQGYQLGVHIADVSYYVRPGTALDEEARK
RATSVYLPDRVVPMLPEAISNGVCSLNAGTDKLTFSAVMDFDKAGKMTHYEFHKSIINSK
VRGVYDEVNQIFDGTAGQDLLDKYAPVLDSLAAGRELAGILKANARANGNFDIDSSESEF
ILDEKGHCIDVLPRHTGPSEQMIEQLMIAANQAAAKLGREQQLPFVYRVHENPDPDRVDA
LKDLLVTIGLNPVCLSHPADVTAKDFAQVMAQAAGTPREKVVSHQLLRTMAKARYDTKPL
GHFGLALQDYCHFTSPIRRYPDTSIHRIMGAYLAGEDKAKIKKEYTDFAQESAKHSSERE
ICAMNSERSADDCFAAEYMAQHLGEEYDGIISGVTMRGVFVELSNSVEGFVPVADFTDKH
FEFDGRLSQVDEATRERLTIGDPLRVVNVAADVSSGRIDFTPAGYHLVEDKKA
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaagatattaaaaaaggaatattggaggctctgcagagtgcgggggaggacctg
tcttcccgttttctcatgcggaaactcggtatcccggaaaaatacagcactactttttat
accgcactgaatcagctgcgccgcgaaaaaaagatcagcgtgaacagccgccatattgtt
cgtcttcatggtgaccctacccagcggattccggcaaccatcgtttcgctgtcccgcagc
tttgcgtttgcccggccggacgacggcggtgacgatatgttcctgcatggcgaagatttg
cacgatgcctttttgggtgactcggttgttttaggcaatgtccgtcaaagccccaaaggc
tccagctgtgaagtgctggaaattacccagcgtgccggcaataccgtgaacggcacgatt
gtgcgcagcccatatggtgtggagctgcacccggatgcggctatccgctttgatattccc
attgccgactttgcacactgcggcgccgaggtaggggacaaggtgcaggcggacatcagc
cgcctgccgcactcctctcgcttttccgcgaaggtcgtgaaaaattacggccatgccgac
tgcgccaagatctgtgcagatgccattttggacgccaacagcgtgaaggttccgttttca
ccggaggctcttgcagaagcagaagccattggttcccgtcccattaccgaagcggatatg
cagggacgtgcggactatcggggctggcctatctgcagcattgacagcgccagcgccaaa
gatttggacgatgccatcagcattgtgcgtacacctcaggggtaccagctgggtgttcat
atcgcggacgtttcctattatgtgcgccccggcacagcactggacgaggaagcacgcaaa
cgcgccacttccgtttacctgccagaccgtgttgtccccatgctgccggaagctatcagc
aacggtgtgtgttccttgaatgccggcacggacaagctgacattctcggctgttatggac
tttgacaaggccggtaaaatgacgcattatgaattccataaatccatcattaacagtaaa
gtccgcggcgtatatgacgaagtcaatcagatttttgatggcaccgctggacaggatctg
ctggacaaatatgcaccggtgctggacagcctggccgccggacgggagctggctggtatc
ctgaaagccaatgcccgtgccaacggcaactttgatattgacagttctgagtcggaattt
atactggacgaaaaaggacactgtattgatgttttgccgcggcacaccggcccttccgag
cagatgattgaacagctgatgattgccgcgaatcaggcggccgctaagctgggccgtgag
cagcagcttccgtttgtttaccgtgtgcatgaaaatccggacccggaccgtgtggatgcg
ctgaaagatttgctggtgaccattggcttgaatccggtgtgcctgtcacatccggcagac
gtaacggccaaggactttgcgcaggttatggcacaggcagccggtacgccgcgggaaaag
gtggtttcacaccagctgctgcgcacgatggccaaggcccgctatgataccaaaccgctg
gggcatttcgggttggctttgcaggactactgccactttacttctcctatccgccgctat
ccggatacttctattcatcgcatcatgggtgcctaccttgccggtgaagataaggcgaag
attaaaaaggaatacacggatttcgcgcaggaatccgctaaacattccagcgagcgtgaa
atctgcgccatgaactctgaacgcagtgcggacgactgctttgcggcagaatatatggct
cagcatttgggcgaggagtacgacggcattatcagcggtgtgaccatgcgcggcgtattt
gtggaactgtccaacagcgtagagggctttgtgccggttgcggactttaccgacaaacat
tttgagtttgacggccgtctttctcaggtggacgaggctacccgtgaacgtctgaccatc
ggtgacccgctgcgggttgtcaatgtggccgcggacgtttccagcggacgcatcgacttt
acaccggccggctatcatttggttgaagataaaaaagcataa
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