Caproicibacterium lactatifermentans: GJQ69_07730
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Entry
GJQ69_07730 CDS
T07898
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
clf
Caproicibacterium lactatifermentans
Pathway
clf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJQ69_07730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clf03019
]
GJQ69_07730
Enzymes [BR:
clf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GJQ69_07730
Messenger RNA biogenesis [BR:
clf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GJQ69_07730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Phage_integrase
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QKN24379
UniProt:
A0A859DSB8
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All DBs
Position
complement(1577369..1578886)
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AA seq
505 aa
AA seq
DB search
MDFQSLQIMPEILKNLKRTGYTEPTPIQQKAIPQVLQKRDLFGCAQTGTGKTAAFAVPIL
QRLAQAPVSGHPIRALVLTPTRELAIQNYDNFRLYGKGLPLNCCVIYGGVSQNAQVQQLK
KGAEILLATPGRLNDLIGQGYIDLSHLEIFVLDEADRMLDMGFIRDVKRVIAQLPAQRQN
LMFSATLPKEIRSLVDSILQDPIEISVTPPSTTVDAIAQEVCYVDKNNKGKLLIWALKDP
RISSALVFTRTKHGADRVVRDLTRAGITAAAIHGNKSQNARQAALTKFRCHQVRVLVATD
IAARGIDIPDISHVFNFDIPEVPETYVHRIGRTARAGSSGTAISFCSIDEKADFKQIEKL
IRKKVPEIKEHPYPMQNLVPMSKEERQKKQVKRRAAAQAARNRRMEKAPAQKHSAPKKPE
KHTAHQNVHKNGAKGKASAGIDAAKKQNFPKASVPAAKKHSRPVEKSRVPVPKESAHRQV
RRDLMKYLPKPLRSRPADQPLKHHL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggattttcaatcactgcaaattatgcccgaaattctcaaaaatttaaagcgtaccggt
tatactgaacctacaccgattcagcagaaagccattccgcaggtgctgcaaaagcgcgac
ctgtttggctgtgcccagacaggcaccggaaaaacagctgcttttgccgtgcccattctg
caaagattggcacaggcgccggtttccggtcaccctatccgcgcattggtattaacgcct
acccgtgaactggccattcaaaactacgacaattttcgcttgtacggaaagggacttcct
ttaaactgctgtgtcatttacggcggtgtcagccagaatgcccaggttcagcagctgaag
aaaggcgccgaaattttgctggccacgcctggtcggctgaacgacctgattgggcagggc
tatatcgacctgtcacacctggagatttttgtattggatgaggcggaccgcatgttggat
atgggctttatccgtgacgtgaagcgggtgattgcacagctgcccgcgcagcggcagaac
ctgatgttcagcgctaccttgccgaaagagattcgttcactggtggacagcatcctgcag
gacccgatagaaatcagtgtaacgccgccctctactacagtagacgccattgcgcaggaa
gtttgttatgtcgataaaaacaacaagggcaagctgctgatttgggcgttgaaagacccg
cgtatttcttcggcactggtctttacccgcaccaaacacggcgcggaccgtgtggtgcgt
gaccttacccgtgccggcattacagcggcagccattcacggaaacaaaagccagaatgcc
cgtcaggcagcgctgaccaagttccgctgccatcaggtgcgtgtgctggtggcaacggat
attgccgcccgcggcattgatattccggatatttcgcacgtctttaattttgatattccg
gaagtaccggaaacgtacgtccaccgtattggccgtacagcccgtgccggcagcagcggc
actgcgatttctttttgcagcatcgatgaaaaagcggatttcaaacagattgaaaagctg
attcggaaaaaagtgccggagattaaagagcacccgtatcccatgcagaatctggtgccc
atgagtaaagaggagcgccaaaagaagcaggtgaaacgccgtgctgcagcacaggcggca
cgcaatcgccgcatggagaaagcacctgcacagaaacacagtgcgcccaaaaagccggag
aaacatacagcacatcagaacgtccacaaaaatggggccaaaggtaaagcatctgctggc
attgacgcagcgaaaaagcagaactttccgaaggcatctgttcccgccgcaaaaaagcac
agtcgtccggtggagaaatcacgtgtgcctgtgccaaaggaatcagcacatcggcaggta
cgccgtgacctgatgaaatatctgccgaaaccgctgcgcagccgtccggctgaccagccg
ctgaagcatcatctgtaa
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