Chondrinema litorale: OQ292_06285
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Entry
OQ292_06285 CDS
T09098
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
clit
Chondrinema litorale
Pathway
clit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OQ292_06285 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clit03021
]
OQ292_06285 (rho)
03019 Messenger RNA biogenesis [BR:
clit03019
]
OQ292_06285 (rho)
Transcription machinery [BR:
clit03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OQ292_06285 (rho)
Messenger RNA biogenesis [BR:
clit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OQ292_06285 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
Mor
AAA
AAA_16
DDHD
Motif
Other DBs
NCBI-ProteinID:
UZR95420
LinkDB
All DBs
Position
complement(1479591..1481225)
Genome browser
AA seq
544 aa
AA seq
DB search
MYTIEDLEIRLLSELKVIAEEIGVKNYSKLPKKELIYKILDQQAILPETELPKANETPKK
TSRKPSQKSKKEPEKKRKRVKQRENVTDESQVEETATATEETESPTVKASAEEDNSKSVR
KLKPRSNFAEDKENGAVESENTEETPPVESKEQKRQEPEKKQQPPVKKSSIREFDGVIEN
EGVLEIMQDGYGFLRSSDYNYLASPDDIYVSPSQIKLFGLKTGDTVKGQIRPPKEGEKYF
ALLRVESVNGKTTEEIRDRVPFEYLTPLFPDERLNLSGRNAKLSTRILDLFAPIGKGQRG
MIVAQPKTGKTVLLKEIANAIAKNHPECYLIVLLIDERPEEVTDMARSVNAEVVSSTFDE
QAERHVKVSSIVLEKAKRMVECGHDVVILLDSITRLARAYNTVSPSSGKILSGGVDANAL
HKPKRFFGAARNVENGGSLTIIATALIETGSKMDEVIFEEFKGTGNMELQLDRKLSNKRI
YPAVDVVSSGTRKEDLLLDKDTLSRVWILRKFMADMNANEAMEYLLNNMRGTRDNEEFLI
SMNG
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgtacacgatagaagacttggaaataaggttgctgtcagagctgaaagtgatcgctgaa
gaaataggagtgaaaaactatagcaagcttcccaaaaaagaacttatctacaaaatcctg
gatcaacaagctatattgccagaaacagaactcccaaaagcaaatgaaactccaaaaaag
acttcacgcaaaccctctcagaagtcgaagaaagagcctgaaaaaaagcgcaaaagagta
aaacaacgtgaaaacgttactgatgaaagtcaagtagaagaaactgcgacagcaacagaa
gaaaccgaatctccaacagtgaaagctagtgcagaagaggataattctaaaagtgtaagg
aaattaaaaccacgtagtaattttgcagaagacaaagaaaacggtgctgtagaatctgaa
aataccgaagaaactcctccagtagaatctaaagagcaaaaacgccaagagcctgagaaa
aaacaacaacctccagtaaaaaaatctagcattcgtgagtttgatggagtaattgaaaac
gaaggtgtgttggagattatgcaagatggttatggcttcttaagatcatcagattataac
tatttggcaagtccagacgatatatatgtttctccttctcaaattaaacttttcggtctt
aaaacaggtgatactgttaaaggtcagataaggcctccaaaggaaggtgagaaatatttt
gcattgttaagagtggaatctgtaaatggtaaaaccactgaagaaatcagagacagagtt
ccatttgaatacctcactccattattcccagacgaaagattaaatctaagtggtagaaat
gccaagctttctacaagaattctggacctatttgcaccaattggtaaaggtcaaagaggt
atgattgtagcacagcctaaaacaggtaaaactgtgcttcttaaagaaattgcgaatgca
atagccaaaaaccacccagagtgttatctaattgtgttgttgattgatgaaagacctgaa
gaggtaacagatatggctcgtagcgtaaatgctgaggtggtatcttctacatttgatgag
caagcagaaagacacgtaaaagtttcttcaattgtattggagaaagctaaaagaatggta
gagtgtggtcacgatgtagtaattctattggattctattacaagattagctcgtgcgtat
aatacagtttctccatcatctggtaaaattctttctggtggtgttgatgcgaatgcatta
cataaacctaagcgtttctttggtgctgcaaggaatgttgaaaatggtggttcactaacc
attattgcaactgctcttattgaaacaggttctaaaatggacgaagttatctttgaagaa
tttaaaggtactggtaacatggaacttcaattagacagaaagctttcaaacaaaagaatc
taccctgcagtggatgtggtttcttctggcacaagaaaagaagacttgctgcttgataaa
gatacgctttcaagagtatggatacttcgtaagtttatggcagatatgaatgccaatgag
gctatggagtacttgttaaataacatgcgtggtaccagagataatgaagaattcttaatc
tcaatgaatggataa
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