Chondrinema litorale: OQ292_07500
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Entry
OQ292_07500 CDS
T09098
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
clit
Chondrinema litorale
Pathway
clit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OQ292_07500 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clit03019
]
OQ292_07500 (recQ)
03400 DNA repair and recombination proteins [BR:
clit03400
]
OQ292_07500 (recQ)
Enzymes [BR:
clit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OQ292_07500 (recQ)
Messenger RNA biogenesis [BR:
clit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OQ292_07500 (recQ)
DNA repair and recombination proteins [BR:
clit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OQ292_07500 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ-1-like_HTH
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
IF2_N
Motif
Other DBs
NCBI-ProteinID:
UZR95653
LinkDB
All DBs
Position
complement(1790584..1792785)
Genome browser
AA seq
733 aa
AA seq
DB search
MLTTEHEGVLKSKLKEVFGYNQFRGNQEKIIENILNGRNSFVIMPTGAGKSLCYQLPAMI
KDGTAIVISPLIALMKNQVDQLNALGVSAYFLNSTLSKSEANKVKKEVLEGVVKLLYVAP
ESLTKEENITLLKKAKLSFVAIDEAHCISEWGHDFRPEYRKIKSIIESVDPSLPIIALTA
TATPKVRSDIQRNLRMEEADIFMSSFHRKNLYYEVKPKVNTKKQLIKFVHQYKGKAGIVY
CLSRKKVEEIAELLQVNGVRALPYHAGMDASTRVKNQDAFLSEDADVIVATIAFGMGIDK
PDVRFVVHYDAPKSIEGYYQETGRAGRDGLDSHCLMFYSDKDIQKLEKFSKDKTVTERDN
AKHLLQEVSYYANSSVCRHRQLLHYFGEYLEQDYDYCDNCKKPREEFNGKEYVKIILETI
LNTGERFSMEHIVNIVRGEDSEGEDSQYVKSYSHDKLSTYAVGKKDSYEFWISAVRQSMI
NRFLARDIDDITILKLTDKGHAFLEEPKSVTFTKNHDYSTEASDEEDDSTNVTHGQASDE
QLFEMLKGLRKKLAKQKGLPPYVIFQDPSLEEMATVFPSSEEELARINGVGLGKVKKFGK
PFIELICKYVEENDIATASDVLVKSKVNKSKNKIQIIQQIDMQVDLEEIAEDRNMAYEEL
IEEIEHICFSGTKLNLDYYIEEIMDDERQDDIWDYFMESDTDNIETALDELGEDYSEDEI
RLMRIKFLSEMSM
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccacagagcacgaaggcgtattaaaatctaagctgaaagaagtttttggctat
aatcagtttagaggtaatcaggaaaagattattgaaaatattttaaatggtaggaactca
tttgtaataatgcctaccggagcaggtaaatctctttgctaccagttgcctgcaatgatt
aaggacggtacagctatagtgatatctcctcttattgctttaatgaagaaccaagtggat
caattaaatgcacttggtgtttccgcatactttcttaattctaccctctcaaagtcagaa
gctaataaagtaaagaaggaagttttagaaggggtggtaaagttactttacgttgctcct
gaatcacttaccaaggaagagaatattactttattaaagaaagctaagctctcttttgta
gctattgatgaggctcactgtatatctgaatgggggcacgactttcggccagagtatcgt
aagataaaatctattatagagtcggttgatcctagcttgccaattatagcattaactgct
actgcaacaccaaaggtgcgatcagatattcagcgaaacttaaggatggaagaagccgat
atttttatgtcttctttccaccgtaaaaacctttattatgaggttaagccgaaagtaaat
actaagaagcagttgataaaatttgtgcatcagtacaaaggaaaagctggtatagtatat
tgcctcagccggaaaaaggtagaagagattgcagagctattacaggtaaatggagttagg
gcattgccctaccatgcagggatggatgcttctaccagagtaaaaaatcaagatgcattt
cttagtgaagatgctgatgtaattgtagcaactattgcttttggaatgggtatagataaa
cctgatgtacgttttgttgtgcattatgatgctccaaaatctatagaaggctattatcaa
gaaacaggaagagcaggtagagatggcttagatagccattgtctcatgttttacagtgat
aaggatattcaaaaactggagaaattcagtaaagataaaactgtaactgagagagataat
gccaagcaccttttacaagaagtaagctattatgctaactcatcagtttgcagacacagg
caattacttcattatttcggtgagtatcttgaacaagattacgactactgcgataactgt
aaaaagcccagagaagagtttaatggcaaagaatacgtgaaaataatactggaaaccatc
ttaaatacaggtgagcgtttcagtatggagcatattgtaaatattgtaagaggagaggat
agtgaaggagaagatagccaatatgtgaaaagttatagtcacgataagctttctacctat
gcagtaggtaaaaaagattcttatgagttctggatatctgcggttagacagtctatgatt
aatagatttttggctagagatatcgacgatattacaatactaaaattaacagataaaggt
catgcatttttagaagagcctaagtctgttacatttaccaagaatcacgattactctact
gaggctagtgatgaagaagatgatagcacgaatgtaacacatggccaggcttctgatgag
cagctttttgagatgcttaaaggtcttagaaagaaattagctaagcagaaaggtctacct
ccatatgttatttttcaagatccttctttggaagagatggctactgtatttccaagttca
gaagaggagcttgctagaattaacggagtcggtttaggaaaagtaaagaaatttggtaag
ccatttatcgaactgatttgtaagtatgtagaagaaaatgatattgcgacagcttctgat
gtacttgtaaaatcaaaagtcaataaatcgaaaaataaaatccagattattcagcaaata
gatatgcaagtagatcttgaagagattgctgaagatagaaatatggcttacgaagaattg
atagaagaaattgagcatatctgtttttctggtactaagctaaatctagattattacatt
gaagaaataatggatgatgaaagacaagacgatatttgggactattttatggagtctgat
actgacaatatagaaaccgcacttgatgaattaggtgaggattattctgaagatgagatc
aggctaatgagaattaagttcttatcggaaatgtctatgtaa
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