Chondrinema litorale: OQ292_11100
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Entry
OQ292_11100 CDS
T09098
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
clit
Chondrinema litorale
Pathway
clit03420
Nucleotide excision repair
clit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OQ292_11100
03430 Mismatch repair
OQ292_11100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clit03400
]
OQ292_11100
Enzymes [BR:
clit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OQ292_11100
DNA repair and recombination proteins [BR:
clit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OQ292_11100
MMR (mismatch excision repair)
Other MMR factors
OQ292_11100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
ResIII
AAA_11
Patatin
DUF5604
Motif
Other DBs
NCBI-ProteinID:
UZR92407
LinkDB
All DBs
Position
complement(2670815..2673064)
Genome browser
AA seq
749 aa
AA seq
DB search
MSFLDSLNEPQREAVVNTDGPLMIIAGAGSGKTRVLTYRIAYLINQGVDPFNILALTFTN
KAAREMQERIEYIVGNEARNLWMGTFHSIFARILRFEANKIGFDSNFTIYDTDDSKSLLR
AIIKEKKLDDKIYKVNGVLARISSAKNNLISWQAYKSNPELILEDDASRRPKIADIYQTY
VMRCFKANAMDFDDLLFNTNVLFRDHLDVLNKYQHKFKYVMIDEFQDTNISQYAITRKLS
NLYQNIAVVGDDAQSIYAFRGANIQNILNFEKDYPDLKTIRLEQNYRSTQNIVNAANSVI
RYNENQLKKKVWTNNDHGEKLELIKAVSDGEEGRLVASSIFQEKMNHGLSNSAFCVLYRT
NSQSRALEEALRSMNIKYKIIGGLSFYQRKEIKDLLAYLRFSVNPSDEEAFKRIINYPKR
GIGNTSVEKILVTADEHNISVWDVVSNSQRFFGNNRLSTALEGFTIMIKSFMLAINNKDA
FKAATQVAKNSGILKELYDDKTVEGRVRYENLQELLNSVKAFVDDPENEDKGLENFLQEV
ALYSTSDTDTDEDSVTMMTIHMSKGLEFSHVYIVGMEEDLFPSQMMLSSRADLEEERRLF
YVAITRAKTRLYLSYALQRYRFGQLKPCEPSRFLEEIHFDYINTVNTISNNRPSSGFKLN
KKTPTSSLKTKSNFSTNFKGKQQHKASENFTPSSPNDLKEGLRVEHLKFGFGKITSIDTH
GSDKRAKVAFDNFGEKTLILSFAKLMIHE
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgagttttttggatagccttaatgaaccgcaacgtgaagcggtagtaaatactgatgga
cctttaatgataatagccggagctggctctggtaaaacaagggtgcttacataccgtatt
gcttatttaattaatcagggagtagaccctttcaatatcttggcacttacttttaccaat
aaggcagcccgagaaatgcaagaaaggatcgagtatatagttggaaatgaagctagaaat
ctatggatgggaactttccactcgatctttgccagaattttaaggtttgaagctaacaaa
ataggttttgatagcaactttaccatttacgatactgacgattctaaatcgctacttcgc
gctattataaaggaaaaaaagcttgacgataaaatttataaagtaaatggtgttttggcg
aggatatcttcagctaaaaacaaccttatctcttggcaggcttacaaaagcaatccggaa
ttaattttggaagacgatgcttctcgccgaccaaaaatcgcagacatctaccaaacatat
gtaatgcgctgctttaaggcaaatgctatggactttgatgatttgctttttaataccaat
gttttatttcgcgatcatctggatgtgttgaataaatatcagcacaagtttaagtatgta
atgattgatgagtttcaggatacgaatatttcgcagtatgctattactagaaagctctca
aatctttaccaaaatatagctgtggtgggagatgatgcacaaagtatctatgctttccgt
ggagctaatatccagaacatcctcaactttgaaaaagattatccagatttaaaaaccatc
aggctagaacagaattatcgctctacacaaaatattgtaaatgcggctaactctgtaatt
agatacaatgaaaaccaactcaagaaaaaagtttggactaataatgatcatggtgaaaaa
cttgagttgattaaagctgtttctgacggtgaagaaggtagactagttgcttcgtctatc
tttcaagaaaagatgaatcatggcttatcaaatagtgctttttgtgtgctttatagaacc
aactctcaatcaagagcattggaagaagcgctcagaagtatgaatatcaaatacaagata
attggaggcctttcattctatcagcgtaaagaaattaaagacttactagcttatttgcgc
ttttctgtaaacccaagtgatgaagaagcctttaagagaataattaattatccgaagcga
ggaattggtaatacttcagttgaaaagatattggttaccgcagatgagcataatatttct
gtttgggatgtagtaagtaattcgcaaaggttttttggcaacaacaggctttcaaccgca
ttagaaggctttacgattatgatcaaaagctttatgctggcgattaataataaagatgct
tttaaagccgctacacaagttgccaaaaactctggcatacttaaagaattgtatgatgac
aaaacagttgagggcagagttcgctacgaaaacttacaagaattactaaactctgtaaag
gcttttgtagatgatcctgaaaatgaagataaaggtcttgaaaactttctacaagaagtt
gcgctttactcaaccagcgatactgataccgacgaagattcagtaacgatgatgaccatt
cacatgtctaaagggttagagtttagccatgtttacatagtagggatggaagaagattta
tttccatcgcaaatgatgttgagctccagagctgatcttgaagaagaaagaagactgttt
tatgtagcaattacacgagcaaaaacccgcttatacttatcgtatgcattacagcgatat
agatttggccagctaaaaccatgtgagccaagtcgttttttagaagaaattcacttcgat
tacatcaataccgtaaatacgataagcaataaccgaccttcttcaggttttaagttaaat
aagaaaacacctacttcatctttaaaaacaaagtctaattttagtactaactttaaaggg
aagcaacaacataaagcatctgaaaactttactccaagtagcccaaatgatttgaaagaa
ggcttaagagtagagcatttgaagttcggatttggtaaaattacatcaatagacacacac
ggaagtgataaacgtgctaaagtagcattcgataattttggtgaaaaaactttaattctt
agttttgctaaactgatgatacatgaatag
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