Chondrinema litorale: OQ292_11860
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Entry
OQ292_11860 CDS
T09098
Symbol
mrdA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
clit
Chondrinema litorale
Pathway
clit00550
Peptidoglycan biosynthesis
clit01100
Metabolic pathways
clit01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
clit00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
OQ292_11860 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
OQ292_11860 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
clit01011
]
OQ292_11860 (mrdA)
Enzymes [BR:
clit01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
OQ292_11860 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
clit01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
OQ292_11860 (mrdA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
UZR92556
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All DBs
Position
complement(2859729..2861525)
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AA seq
598 aa
AA seq
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MIDKFSHIRAVFVIVALVFTVKLFHIQVFDDNYRKTADNNIIRTIVKYPLRGMIYDKNGK
LIVRNRPVFDLMFSSRELDVKDTTQFCEFFNIDREYLRTKLEEAKKRRGQPVALVKQLSV
LDFARIEDRLNEFPGIYIQEKTLRDYPQNSMANIIGYVKEVDKDFLDSEQGKGYRQGDLV
GKSGLERQYEPVLKGKKGVSFVMTNVRGIQKGKFQNGNFDTLPQVGKDLYTGIELDLQKY
GEKLMQNKKGAIVAIDPSTGEILTMISAPSYDPNLLTGEGKKASQNFLELIRDPSKPLFN
RAIQAAYPPGSTLKTVMALTGLDNKALDTITTIFSCDKSLVGCHNHVSPLNVFGSIQHSC
NPFYFKALRKIILTGKSSDQREDTRIGLQAWHDKLGEFGLGHKTGVDLPFEKNGLIPSPA
YYDKNYYIKEWRLPNVYSIGIGQGEVLVTPVQLATQASAIANRGWYYTPHLVKQIGDSTL
QYDKQVVDIDKAYFDYIARAMSQIYTASLAKHPDIVICGKTGTAQNPHGEDHSVFMAFAP
LDNPKVAISVYVENAGFGGSWAAPIASLMIEKYLKGEIDQKRVWLENYVLAGDFMNVQ
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgattgataaattctcacatatcagagctgtttttgtaatagttgcactggtttttaca
gtgaagcttttccacatccaagtttttgatgataactatagaaaaacggctgataataac
attatccgtacaattgtaaaatatcctttacgcgggatgatctacgataaaaacggtaaa
ctgattgttagaaacagaccagttttcgacttaatgttttcgtctagagagcttgatgta
aaagacacaacccagttttgtgagttttttaatatcgatagagaataccttagaactaag
cttgaagaagcaaagaaaagaagaggtcaaccagttgctttagtaaaacaactttctgtt
cttgactttgctcgtattgaagacaggcttaatgagtttcccggcatttatattcaagaa
aaaactttaagagattatccacaaaacagcatggctaatattattggctatgtaaaagaa
gtggataaagattttctagactctgaacaaggtaaaggttacagacaaggcgacttagtt
ggaaaaagtggattagaaagacagtatgaacctgtattaaaaggtaaaaaaggcgtcagc
tttgtaatgaccaatgttagaggtattcaaaaaggaaaattccaaaatggaaattttgat
actttacctcaagttggcaaagacctttataccggtattgaacttgaccttcaaaaatat
ggtgagaaattaatgcagaataaaaagggagcaattgtagcgattgacccttctactgga
gaaattcttactatgatttctgctccatcttatgatcctaacttattaactggtgaagga
aaaaaagcgagccaaaactttctagaattaattagagatccatctaaacctctgtttaac
agagcaatacaagctgcttaccctccgggctccacacttaaaacagtaatggcactaact
ggcttagataataaagcattagacaccattaccactatattttcgtgtgataagtctcta
gtgggttgccataatcatgtatctccattaaatgtttttggttcaatccagcattcgtgt
aacccattctactttaaggcattaagaaaaataattttaacagggaagagtagcgatcaa
agagaagatacaagaattggcttacaagcttggcacgataagcttggtgagtttgggctt
ggccataaaacaggagttgatttacctttcgaaaaaaatggtttaattccttctccagct
tattacgataaaaattattacataaaagaatggcgtttaccaaatgtctattcgataggt
attggacaaggcgaggtattagttacacccgttcaacttgctacacaagcatctgcaatt
gctaacagaggttggtattacactcctcacttagtaaaacaaattggtgatagtacttta
cagtacgacaaacaagtagtagacattgataaagcttatttcgattatatcgctcgagca
atgtcgcagatttatactgccagtttagccaaacacccagatattgtaatttgcggcaaa
actggaacagctcaaaacccacatggcgaagatcactcagtatttatggcttttgcacca
ttagataaccccaaggttgcgatttctgtttatgtagaaaatgcaggtttcggaggcagc
tgggcagcccctattgcaagtttaatgattgaaaaatacctaaaaggagaaattgatcag
aaacgtgtgtggctcgaaaattatgttttagctggtgattttatgaatgtgcagtaa
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