Chondrinema litorale: OQ292_12070
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Entry
OQ292_12070 CDS
T09098
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
clit
Chondrinema litorale
Pathway
clit03410
Base excision repair
clit03430
Mismatch repair
clit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
clit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OQ292_12070 (recJ)
03430 Mismatch repair
OQ292_12070 (recJ)
03440 Homologous recombination
OQ292_12070 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clit03400
]
OQ292_12070 (recJ)
DNA repair and recombination proteins [BR:
clit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
OQ292_12070 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
OQ292_12070 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OQ292_12070 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
UZR92592
LinkDB
All DBs
Position
complement(2914994..2916733)
Genome browser
AA seq
579 aa
AA seq
DB search
MYKRWIVKEIPDEEIVEKLCSEINVSKPLGAILAQRGIDSFEKAKAFFRPKLEDLHDPFL
MKDMQIAVERLQKAIENEERILIYGDYDVDGTSAVSLMYSFLKKFYNHIDYYVPDRYQEG
YGVSKRGIDYAASEGCSLIIALDCGIRAIDKVEYANSLGLDFIICDHHKPGETVPEATAI
LNPKQVDCSYPYKELTGCAIGFKLIQAYTIYQELNLEEAFNYMDYAAVSIACDIVPVTGE
NRIIAKFGLDQINNTPRPAYHALKQLAGLPQNLTVSNVVFGFGPRINAAGRISHANQAVK
LLITQTLEEALESAKDVHQKNDTRKIYDEQITNEALAMMDCGGTSYGKTTVLFKDDWHKG
IIGIVASRCIEKCYRPTIIITSSNGKATGSARSVKDFDIHEAIAACSKHLIQFGGHKYAA
GITLEIDQVPAFAHQFEKVVSETILPDQLIPKIEIDAQLDLSQITWNFYKIIEQMSPFGP
ENLRPVFVSEVVCDKGKIRLLKEKHLKLTVRQKETSFCLDAIAFNFGEFYRELMSRDGAP
FYICYTIEKNEYKGKVTLQLMIKDIKTRLEHPLEASPSN
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtataagcgatggattgttaaagagatacctgatgaagaaatagtagaaaaactctgc
tctgaaataaatgtaagcaaacctttgggagctattttagcccaaagaggtattgatagt
tttgaaaaagccaaagcttttttcaggcctaaactggaagatttgcacgatccgttctta
atgaaagatatgcaaattgcagttgaaagattgcaaaaagcaattgaaaatgaagaaaga
attcttatttatggcgactacgatgtagatggaacttctgcagtttcgttgatgtactcc
ttccttaaaaagttttacaaccatatagattactatgtgccagacagataccaagaaggt
tatggcgtttcaaaaagagggattgattatgctgcaagtgaaggttgctcacttataatt
gcccttgattgtggtattagagcaattgacaaagttgaatatgcaaattctttaggatta
gattttattatttgcgaccaccataaacccggagaaactgtacctgaggccactgctatt
cttaaccccaaacaagtagattgctcttatccttataaagaacttactggttgtgctatt
ggctttaaactaattcaagcttatacaatttatcaagaattgaatttagaagaagctttt
aattacatggattatgctgctgtaagtattgcttgcgacattgttcctgtaactggtgaa
aatcgtattatcgctaagtttggtcttgatcaaattaataatactccacgcccagcttat
catgcgctaaaacaattggctggtttaccacaaaatctcactgttagcaatgttgttttt
ggcttcggaccaagaattaatgccgcaggaagaatttctcatgccaatcaagcagttaag
ttacttattacacaaacattagaagaagcattagaaagtgctaaggatgttcatcagaaa
aatgatactagaaaaatttatgatgaacaaattaccaatgaagcgctcgccatgatggac
tgtggaggtacgagttatggtaagactactgtattatttaaagacgattggcacaaaggt
attatcggtattgtcgcttcaaggtgtatagaaaagtgttaccgacctacaatcattatc
acatcttctaatggtaaagcgactggttctgccagatctgtaaaagattttgatattcac
gaagcaattgctgcctgttctaagcatttaattcagtttggtggtcataaatatgcagcg
ggaattacattggaaatcgatcaagtacctgcatttgctcatcaatttgaaaaagtagta
agtgaaactattttgcctgatcaattaattccaaagattgaaatagatgctcaacttgat
cttagccagattacttggaatttttacaagattatagaacagatgtctccatttggccct
gaaaacctaaggcctgtttttgtttcggaagtagtttgtgataaaggtaaaataagactg
ttaaaagaaaagcatttaaagcttacagtaaggcaaaaggaaactagtttttgtttggat
gcaattgcatttaattttggagagttttatagagaactaatgtccagagatggagcacct
ttctacatttgttatactattgagaagaatgaatacaaaggaaaggtaacattacagtta
atgattaaagacattaaaactcgattggaacacccattagaagcgtcgccatcaaactaa
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