Chondrinema litorale: OQ292_13790
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Entry
OQ292_13790 CDS
T09098
Name
(GenBank) exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
clit
Chondrinema litorale
Pathway
clit03030
DNA replication
clit03430
Mismatch repair
clit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
clit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OQ292_13790
03430 Mismatch repair
OQ292_13790
03440 Homologous recombination
OQ292_13790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clit03032
]
OQ292_13790
03400 DNA repair and recombination proteins [BR:
clit03400
]
OQ292_13790
Enzymes [BR:
clit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OQ292_13790
DNA replication proteins [BR:
clit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OQ292_13790
DNA repair and recombination proteins [BR:
clit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OQ292_13790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DNA_pol_A_exo1
DEDDh_C
GIY_YIG_2
DDE_Tnp_IS66
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
UZR92929
LinkDB
All DBs
Position
3349844..3351214
Genome browser
AA seq
456 aa
AA seq
DB search
MYAIVDLETTGGLSEVDRITEVAIFIHDGSKIIDEFTSLINPEREIPPFVSRLTNISDEM
VATAPHFYEVAKRIIEMTENCTIVAHNASFDYNFLKHEFKMLGFDYRKNSLCTVQLSRVI
LPGMRSYSLGKLCKEIGIDLSSRHRAFGDARATVTLFEMLLEKGTRGVFEEYLSLDLYSA
KHHPNVSPETIENLKEETGIYYFHDQEGNIIYIGKSKNIRTRVMSHFTGNTTRKAKKLKN
AIADISFECTGSELVALLKEESEIKKHQPFFNSALKRGEFRFGIYAYPNKNGYLNLMVRD
KRAMKDEPVIYVYSKNRGIKMMEQMLEKFKLCQKLCGLYESRDSCFNYMVSLCNGACVGK
EDVAIYNNRVEQAIAYLKGKGQNYFILDKGRHSNERTVVQIENGRYKGFGYLDMEEAYVN
ASALKQVIIPSNGNKDTLQIITTYLRKKKVEKIIRY
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtatgctatagtcgatcttgaaacaacaggaggcttatcggaagttgacaggatcact
gaagtagcaatctttattcatgatggttctaaaataatcgatgagtttacctctttaatt
aatcctgaaagagaaattcctccatttgtttctcgccttacaaatatttcagatgagatg
gtggcaactgcgcctcatttttatgaagtggccaaaagaataatcgagatgacagaaaat
tgtacgatagtggcgcataatgccagtttcgattacaattttttgaagcatgaattcaaa
atgctaggtttcgattatcgtaaaaatagtttatgtacggtacagttaagccgagtgatt
ttacctggcatgagatcgtatagcctaggcaaactttgtaaagaaataggcattgattta
agcagccgtcacagagcttttggagatgcaagagctacagttacattatttgagatgttg
cttgaaaaaggtaccaggggtgtttttgaggaatacctttcgttagatttgtacagtgcc
aagcatcatccgaatgtatctccagaaaccatagaaaacctgaaagaggaaactggtatt
tactatttccacgatcaggaaggaaatattatttacataggtaaatcaaaaaatattcgt
acacgggtgatgtcgcattttacaggcaataccactcgaaaagccaaaaaattaaaaaat
gccatagccgatatttcttttgagtgtacaggaagtgagttggtggctttattaaaagaa
gaatctgaaattaaaaaacatcagccattttttaactctgcattaaaacgtggagagttt
aggtttggaatttatgcgtatcccaataaaaatggatatttaaacctaatggtgagagat
aagcgagccatgaaagatgagcctgtcatttatgtttattctaagaatcgtggaataaag
atgatggaacagatgcttgagaaatttaaactttgccagaagttatgtggcttgtacgaa
tctagagattcctgtttcaattatatggttagtttatgtaatggtgcttgtgtagggaaa
gaagatgtagctatttacaacaatcgtgtggagcaagctatcgcttatttaaaaggcaag
gggcaaaactattttattttagataaagggcgacatagcaatgagagaacagttgtgcaa
atagaaaatggaaggtataaaggttttggttatttggatatggaagaagcttatgtgaat
gcttctgctctaaaacaagttattataccttccaatggaaataaagatactctgcaaata
attacgacttatctaagaaagaaaaaggtcgagaaaattattaggtactaa
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