Chondrinema litorale: OQ292_17675
Help
Entry
OQ292_17675 CDS
T09098
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
clit
Chondrinema litorale
Brite
KEGG Orthology (KO) [BR:
clit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clit03032
]
OQ292_17675 (topA)
03400 DNA repair and recombination proteins [BR:
clit03400
]
OQ292_17675 (topA)
Enzymes [BR:
clit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OQ292_17675 (topA)
DNA replication proteins [BR:
clit03032
]
Prokaryotic type
DNA Topoisomerases
OQ292_17675 (topA)
DNA repair and recombination proteins [BR:
clit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OQ292_17675 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
UZR93680
LinkDB
All DBs
Position
4272254..4274602
Genome browser
AA seq
782 aa
AA seq
DB search
MTKNLVIVESPAKAKTIEKYLGKDYLVKSSYGHVRDLPKGNGAIDIENGFKPEYVISPDK
KQVISELKKLVKDAEIVWLATDDDREGEAISWHLKEALNLKDDHTKRIVFREITKNAILN
AIQTPRTIDVDLVNAQQARRVLDRLVGFELSPVLWKKIKAGLSAGRVQSVAVRMVVERER
EVDAFEPKSAYKVNAIFDLGKGKILQADLNKRFDTKEEAKAFLESCTDAAFSIEKLETKP
GKKSPAAPFTTSTLQQEASRKLYFSVSQTMAVAQRLYEAGHITYMRTDSVNLSNEARQFA
ANEIVSHYGEDYLKNRQFKNKSASAQEAHEAIRPTNFANHSISGERNDVKLYDLIWKRAI
ASQMSDAKLEKTTATIDITGRDEKLVATGEVIKFDGFLKVYIESTDDEDDDNEESKGMLP
PLDKGQVLELNNLRATERFSRPPARYTEASLVKRLEEKGIGRPSTYAPTISTIQKRNYVI
KEQREGVERKYNELVLADSKIDENVLTEITGAEKNKLFPTNMGMVVNDFLTKNFSNIVDY
SFTAKVEEQFDSIASGKIVWNDMINSFYSGFHTTVEDADKNLTRSDAGTTRKLGEHPESG
KEMFVKIGKYGPYVQIGTQEDEEKPLYASLRKGQYMDKITLEEALELFKLPRDVGEFEGK
KVVAAIGRFGPYVRHDGKFVSLGKELDPHTVDLDTAIELIKAKREADAKKLIKEFEQDAD
LKVLNGRWGPYISFKKKNYKIPKGTEAESLTYEKCIEIIESTPDKKSGGGGKKKKTAKTE
SK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaaatttagtcatagtagaatcaccagcaaaagcaaagacaattgaaaagtat
ctgggtaaagactatctagttaaatccagctacgggcatgttcgcgacttgccaaaagga
aatggcgcaattgatattgagaatgggtttaaaccagagtatgtaatctctcctgacaag
aagcaggttatatctgaattgaaaaaactggttaaagatgcggaaatagtctggttagca
actgacgacgaccgcgaaggggaagctatatcctggcatttgaaggaagccctcaatttg
aaagatgatcataccaaaagaattgtttttagagaaattactaaaaatgcaattcttaat
gctattcaaactccaagaactattgatgtagatcttgtaaatgcacaacaggcgaggaga
gtactagacagattagtaggttttgagctttctccagtactttggaaaaagattaaagct
ggattatctgccggtagggtacagtctgtagcagttcgaatggtagtagagagagaaaga
gaggtagatgcttttgaaccaaaaagtgcctataaggtaaatgcgatattcgatttagga
aaaggaaaaattcttcaggcagatcttaataaaagatttgatacaaaagaagaggcaaaa
gcttttcttgaaagttgtactgatgctgctttttcaattgaaaagttagaaactaaacca
ggtaaaaaatcacctgcagctccttttacaacttcaacattgcaacaagaagcaagtaga
aagttatatttttcagtttctcagacaatggcagttgcccaaaggctttacgaagcagga
catattacctatatgagaactgactctgtaaacctatctaatgaggcaagacaatttgct
gccaatgaaattgtaagccactacggagaagattatttaaagaatagacagtttaaaaat
aagtctgcatctgctcaagaagctcacgaagctattagaccaactaattttgccaatcat
tctatttcaggagaaagaaatgatgtgaagctctacgaccttatttggaaaagagcaatt
gcgtctcaaatgtctgatgctaaactcgaaaaaaccactgcaacaattgatattactgga
agagatgagaaattagttgctacaggagaagtaattaagtttgatgggtttttaaaggtt
tacatcgaatctactgatgatgaagatgacgacaatgaagaaagcaaaggaatgcttcct
ccgttggacaaaggccaagtactagagttaaataacctaagagctacagaacgctttagc
agaccaccggcaagatatacggaagctagtcttgtaaaaagattagaagaaaaaggtata
ggcagaccttctacttatgcaccaaccatttctactattcaaaagagaaattatgtaata
aaggagcaaagagaaggtgttgaaagaaaatacaatgagttagtacttgcagacagtaaa
attgatgaaaatgtactgacagaaattactggagctgagaagaataaacttttcccaacg
aatatgggaatggtagtaaatgacttcttaaccaagaatttctcaaacattgtagattat
tcttttacagctaaggtagaagaacagtttgactctatcgctagtggtaaaattgtctgg
aatgatatgattaactctttttacagtggttttcatactactgtagaagatgcagataag
aatttaacaagaagtgatgctggtactacaagaaagttgggtgagcatccagagagtgga
aaggaaatgtttgtcaaaattggtaaatatggaccttatgtgcagatcggaacgcaagaa
gacgaagaaaaaccattgtacgcctctttaagaaaagggcagtatatggataaaataacc
ctagaagaagcacttgaactttttaaactaccaagagatgttggagagtttgaaggtaag
aaagtagtagctgcaattgggaggtttggtccctatgtaagacacgatggaaaatttgtt
tctcttggaaaagaattagacccacacacagtagatttagatactgccatagaactaatt
aaagctaaaagagaagctgatgctaaaaagctaataaaagagtttgagcaagatgcagat
cttaaagtcttaaatggtcgctggggaccttacatttcttttaaaaagaaaaattataaa
attcctaagggtacagaagcagaatcacttacttacgaaaaatgtatagaaattatcgag
tcaaccccagataagaagtctggaggtggggggaaaaagaaaaaaactgcaaaaacagaa
tcaaaataa
DBGET
integrated database retrieval system
