Chondrinema litorale: OQ292_20450
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Entry
OQ292_20450 CDS
T09098
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
clit
Chondrinema litorale
Pathway
clit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OQ292_20450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clit03019
]
OQ292_20450
Enzymes [BR:
clit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OQ292_20450
Messenger RNA biogenesis [BR:
clit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OQ292_20450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
UZR96522
LinkDB
All DBs
Position
unnamed2:14528..15823
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AA seq
431 aa
AA seq
DB search
MSFEKLGLSEALLKAISKKGYTTPSPIQEQAIPAILEGKDVLASAQTGTGKTAGFTLPLL
QRLSDKANRKFRPIRGLILTPTRELAAQVFTNVKEYSEFLDLRSAVIYGGVNQNPQVNAI
NRGVDILVATPGRLLDLHNQNLVSLKHVRILVLDEADRMLDMGFLRDIERIMKVMPERRQ
GLMFSATFSKPIKKLANGILNQPVQVEVTPENTTVESISQKIYRVAKTKKTGLIIKLISE
GNWTQVLVFTRTKHGANRLCEKLGKNRIKSAAIHGNKSQGARTKALAGFKDGSISVLVAT
DIAARGLDIPLLPHVINFELPNVAEDYVHRIGRTGRAGASGEAISLVSADETAYLKDIEK
LIGIKFPINIVEGFEPDPNASTEPIKQGQNRNQNSQPKKAKKKPSNGNFNNRNKTNNSGA
GNRKRKRIRTK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaaaaattaggcttgtccgaagccttgctaaaagctattagcaaaaaagga
tacacaacaccaagtcctattcaggaacaagctataccagctatattagaaggcaaagac
gtattagcgtctgctcaaacaggaaccggaaaaactgctggttttactttgccacttcta
caaagattatctgataaagcaaatagaaagtttaggccaattagaggtttaattttaaca
cctacaagagagttagctgctcaggtttttactaatgtaaaggaatatagtgaattctta
gacttgcgctcggcagtaatttatggtggagtaaaccaaaatccgcaggtaaatgctatt
aatagaggtgtagacattttggtagcgacacccggtcgtttattggacttgcacaatcag
aatctagtttcactaaaacatgttagaattttagttttagatgaagccgacagaatgtta
gacatgggctttttacgcgatattgagcgtattatgaaagtgatgcctgaaagaagacaa
ggtcttatgttttcagctacattttctaaaccgattaaaaaattagccaatggcatttta
aatcaaccagtgcaagttgaggtaacgccagaaaataccacagttgaatcaatttcgcaa
aaaatatatcgtgtagcaaagaccaaaaaaacagggttaattatcaaattaatttctgaa
ggaaactggacacaagttttggtatttaccagaacaaagcatggtgccaatagactttgt
gaaaaactgggtaaaaatagaattaaatctgctgctatacatggcaacaaaagtcaaggt
gcgcgtacaaaagccttagcaggttttaaagatggaagtattagtgttttagttgctaca
gacattgctgcacgtggcttagatatacctttactaccgcatgttataaattttgagctt
cctaatgtggctgaagattacgtacatagaattggtagaacagggcgtgctggagcaagt
ggagaggcaattagtttggtaagtgctgatgaaaccgcttacttaaaagatattgaaaag
ctaattggaattaaatttccgattaatatagtagaaggttttgagcctgatccaaatgca
tcgacagaacctataaagcaaggccagaataggaatcaaaattcacagcctaaaaaagca
aagaagaaaccaagcaacggtaactttaacaacaggaacaaaaccaataattctggtgca
ggcaacaggaaaagaaaaagaattagaactaagtaa
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