Chondrinema litorale: OQ292_22760
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Entry
OQ292_22760 CDS
T09098
Name
(GenBank) AMP-binding protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
clit
Chondrinema litorale
Pathway
clit00061
Fatty acid biosynthesis
clit00071
Fatty acid degradation
clit01100
Metabolic pathways
clit01212
Fatty acid metabolism
clit02024
Quorum sensing
clit04146
Peroxisome
Module
clit_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
clit00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
OQ292_22760
00071 Fatty acid degradation
OQ292_22760
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
OQ292_22760
09145 Cellular community - prokaryotes
02024 Quorum sensing
OQ292_22760
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
clit01004
]
OQ292_22760
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
clit04147
]
OQ292_22760
Enzymes [BR:
clit01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
OQ292_22760
Lipid biosynthesis proteins [BR:
clit01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
OQ292_22760
Exosome [BR:
clit04147
]
Exosomal proteins
Exosomal proteins of breast milk
OQ292_22760
Exosomal proteins of breast cancer cells
OQ292_22760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
AMP-binding_C_3
DUF5065
Motif
Other DBs
NCBI-ProteinID:
UZR96482
LinkDB
All DBs
Position
unnamed2:complement(589902..591584)
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AA seq
560 aa
AA seq
DB search
MEIKTNFWCRNYPVGVPQEINSYQYTTIIDQFEQSVLRYGPLPAYDCMGASITYDELDML
SRNFAAYLQNYLGLKKGSRVAIQLPNIIQYPIALFGILRAGMVVVNTNPLYTAREMKHQF
EDSGVEAIIILANFAHNLEQILPETIIEHIIITEMGDMLGGLKKHLVNGTVKYIKKLVPK
YHIPKAVSFDSVIEKGYQRTLRPVNIRPDDIAFIQYTGGTTGVSKGAKLSHKNIVANVEQ
FDVWVGDSLSKGEEIIISVLPLSHILALTTNILTMMKVGGRCVLIPNPRDFNSFIKELKR
YKFTIFSGVNTLFKALLNHPDFDSVGFSSLKITATGGMAVQQSVAERWKKKTGVPIVEGY
GMTETSPVLTFNSMVAGEERLGTIGVPLPSTTIIIANNEGQEVPFGEPGEIYAKGPQIME
GYWNRPEETENAFTKDGWFKTGDIGVMDKHGFIKLVDRKKEMILVSGYNVYPSEIEEVVS
SHQKVTEVGAIGVPSEKSGEVVKIYVVKKDQSLSKEELIAHCKQNLAPYKVPKHIEFRDE
LPKTNVGKILRRKLKEECLK
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggaaattaaaacaaatttctggtgcagaaactatccagttggtgtaccacaagaaatc
aattcttatcaatatacaacgatcatcgatcaatttgaacaaagtgttttaagatatggt
cctttgccagcatacgactgtatgggagcatccattacttatgatgaattagatatgctt
tctagaaattttgcagcctatttgcaaaattatttgggtttaaaaaaaggtagtcgtgtg
gctattcaactacctaatattatacagtatccaattgccttatttgggattttacgtgcc
ggaatggttgtagtgaataccaatcctttatacacagcccgagaaatgaaacatcagttt
gaagactcaggtgtagaagctattattatattggcaaattttgcgcataaccttgagcaa
attcttcctgaaactattatagagcacatcattattacagaaatgggtgatatgcttgga
ggtttaaaaaagcatctggtaaatggaaccgtaaaatatattaaaaaactggtgcctaaa
tatcatatacctaaagcagtttcattcgattctgttatagaaaagggctatcaaagaact
ttgagaccagtaaatataaggccagacgatattgcttttattcaatatacaggtggaaca
actggtgtatcaaaaggggcgaagctatctcataaaaatatagtggcaaatgtagaacag
tttgatgtttgggttggagatagtctaagtaaaggcgaagagattattatctcggtttta
cctttgtctcacatcttggccttaacaacgaacatccttaccatgatgaaagttggcggc
aggtgtgtcttgataccaaaccctagagattttaatagttttattaaagagttaaaacgc
tataaattcaccattttttcaggggtaaacaccttgtttaaagctttgctaaatcatcct
gattttgatagtgtaggattctctagtctaaaaattacagctactggtggtatggcggtt
caacaatctgtagccgaacgttggaaaaagaaaacaggtgtgcctattgtagaaggttat
ggaatgacggaaacttcacctgttcttacttttaatagcatggtagctggcgaagaaaga
ttaggtactattggagtacctttgccaagtaccacaattataattgcaaataatgaaggg
caagaagtgccatttggagagcctggtgagatttatgcaaaagggccacagattatggaa
ggttattggaatcgaccagaagaaaccgaaaatgcttttaccaaagatggttggtttaaa
actggtgatatcggtgtgatggataaacatggatttattaagctagtagatcgcaaaaag
gaaatgattttagtttctggctataatgtgtacccaagtgagattgaagaagtggtttct
tcacatcaaaaagtgacagaagtgggagccattggtgtacctagcgaaaagtctggtgaa
gtagttaaaatttatgtggtaaaaaaagatcaatcattatcaaaagaagaattaatagcg
cactgcaaacaaaatttagccccttacaaagtaccaaagcatatagaatttagagatgaa
ttaccaaaaactaatgttggtaaaattctccgaagaaagctcaaagaagagtgtttaaaa
taa
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