Chondrinema litorale: OQ292_29115
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Entry
OQ292_29115 CDS
T09098
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
clit
Chondrinema litorale
Pathway
clit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OQ292_29115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clit03019
]
OQ292_29115
03009 Ribosome biogenesis [BR:
clit03009
]
OQ292_29115
Enzymes [BR:
clit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OQ292_29115
Messenger RNA biogenesis [BR:
clit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OQ292_29115
Ribosome biogenesis [BR:
clit03009
]
Prokaryotic type
rRNA helicases
OQ292_29115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
RecG_N
CMS1
Motif
Other DBs
NCBI-ProteinID:
UZR97878
LinkDB
All DBs
Position
unnamed7:173245..175017
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AA seq
590 aa
AA seq
DB search
MQIETFEASGLSPEILKALKEIGFEQPTPIQAQTLPHLLSGNQQDLVALAQTGTGKTAAF
GLPLVELADPSSKSVQGLVLCPTRELCIQISKDLQSFSKYKKGLNVLPVYGGASITPQIK
DLKQGAQLVIGTPGRVIDLMKRKALDIRDISWLVLDEADEMLNMGFKDDLDTILTGASEE
KQTLLFSATMPKEIAMISSNYMNNALEISVSKKNTTSSNVNHVFYMVQAKDRYLALKRIA
DLQPDIYGIIFCRTRRECKEVSEKLMHDGYNADALHGDLSQVQRDYVMNRFRIRNIQLLV
ATDVAARGLDVNELTHVINYNLPDEAEVYVHRSGRTGRAGNKGTSVSIIHSREMGKIRII
EKKGNFKFERLQVPNGKEICEKQLFSLIDKVEQVSVDGDEIEEFMDVIYKKLSWLERDEL
IKKFVSIEFNRFLEYYKDAPDLNKNVKEKRERDSSFSDRGDRNGSKGGRRGSNGYKKYSR
YFINLGEKNSLNPAKLIGLINKQFRNEKIPVGNIEIMKSFSFFEIDSEFSTSFPESFSNL
SYQGIPVNVEPANAKPSGRDSRGGGGGRSRSGNGEGFRKKKFGNSKRKWD
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatagaaacatttgaagcttctggcctttcgccagaaatccttaaggcgcttaag
gaaattgggtttgagcaacccacacccatccaggcacaaactctgccccacttactttca
ggtaatcagcaggatcttgttgcactggctcagacaggaacaggaaaaaccgctgcattt
ggccttccactagtagaattggcagatccttcttcaaaatctgtacagggattagtatta
tgtccgacaagagaactttgtattcaaattagtaaagaccttcagtctttttctaaatac
aaaaaaggtttgaatgtattaccagtttatggaggtgcatctattacgccacaaattaaa
gatttgaaacaaggtgcacaattggttattggtactccgggtagagtaatagatttaatg
aaaagaaaagctcttgacattagagatatttcttggttagtattggatgaagctgatgaa
atgttaaatatgggtttcaaagacgatttggacaccattcttacaggagcatctgaagaa
aaacaaactttattgttttctgctactatgccgaaagaaattgcaatgatttcatctaat
tacatgaataatgcattggaaatttctgtaagcaagaaaaacacaacatctagtaatgta
aatcatgtattttacatggtgcaagcaaaagatcgctatttagcacttaagcgtattgca
gatttacagccagatatctacggcattatcttttgcagaaccagaagagagtgtaaagaa
gtaagtgagaagttaatgcacgatggctataatgccgatgcattacatggagatttatct
caggttcagagagattatgtgatgaatcgtttccgtataagaaacattcaactattggta
gcaacagatgtagctgctcgtgggctagatgtaaacgaacttactcacgtaattaactac
aatctaccagacgaagccgaagtgtatgtacacagaagtggtagaactggtagagcagga
aataaaggaacatctgtatctattattcatagtagagagatgggcaaaatcagaatcatt
gagaaaaaaggtaatttcaaatttgagagattacaagttcctaatggtaaagaaatttgt
gaaaaacaacttttcagtctgattgacaaagtagagcaagtaagtgtagatggtgatgag
attgaagagtttatggatgtgatctacaaaaagctttcttggttagagagagatgaactt
attaaaaagtttgtttcaatcgagtttaaccgttttcttgaatactataaagatgctcca
gatcttaacaaaaatgttaaggaaaaaagagagagagattcttctttttctgatagagga
gatagaaatggtagcaaaggaggtagaagaggtagcaatggctataagaaatactcaaga
tactttatcaacctaggtgaaaagaacagcttaaaccctgctaaattgattggtttaata
aacaagcaatttagaaatgagaagattccagttggtaatatcgagattatgaaaagtttc
tcatttttcgagattgacagcgagtttagtactagcttcccagaatcttttagcaattta
agttatcagggaattccagtgaacgtagaaccagcaaatgctaaacctagtggaagagat
tctagaggcggcggaggcggtagaagcagaagcgggaatggtgaaggatttagaaagaaa
aaattcggcaactcaaagagaaaatgggattga
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