Corynebacterium lizhenjunii: G7Y31_04900
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Entry
G7Y31_04900 CDS
T07490
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cliz
Corynebacterium lizhenjunii
Pathway
cliz03030
DNA replication
cliz03410
Base excision repair
cliz03420
Nucleotide excision repair
cliz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cliz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G7Y31_04900 (ligA)
03410 Base excision repair
G7Y31_04900 (ligA)
03420 Nucleotide excision repair
G7Y31_04900 (ligA)
03430 Mismatch repair
G7Y31_04900 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cliz03032
]
G7Y31_04900 (ligA)
03400 DNA repair and recombination proteins [BR:
cliz03400
]
G7Y31_04900 (ligA)
Enzymes [BR:
cliz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G7Y31_04900 (ligA)
DNA replication proteins [BR:
cliz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G7Y31_04900 (ligA)
DNA repair and recombination proteins [BR:
cliz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G7Y31_04900 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G7Y31_04900 (ligA)
MMR (mismatch excision repair)
DNA ligase
G7Y31_04900 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G7Y31_04900 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Auto_anti-p27
Zn_ribbon_ISL3
Motif
Other DBs
NCBI-ProteinID:
QPK80031
UniProt:
A0A7T0KFW8
LinkDB
All DBs
Position
1046860..1048902
Genome browser
AA seq
680 aa
AA seq
DB search
MTVTNSGANPVDIQRQWSELAQEVRKHREQYYNGQPSIPDADFDQLFAALVQLEAQHPEL
QSPDSPTQQVGAAPEGAADIEHLERLYSLDNVFDAAELQDWLDRTPAKAYLTELKIDGLS
IDLVYRDGQLATAATRGDGRVGEDITANARVIEDIPQHLTGSDDYPVPALVEVRGEVYMR
PDDFEQINAARREEGKPTFANPRNAAAGGLRMKDPQEVKKRRLHMVCHGLGAREGFEPTS
QHDAYEALSAWGFPVSPYTQLVHSAQEVQDRVAYWAQHRHDAHFEMDGLVVKVDDLASQR
SLGATSRAPRWAIAYKYPPEEVTTKLLDIEVGVGRTGRVTPYAVMEPVFVSGSTVSKATL
HNQFEVKNKNVLIGDTVIIRKAGEIIPEVLGPVLDLRDGRETEWVFPTHCPSCGTRLAPQ
KEGDQDWRCPNTQSCPAQLSARLEYLASRKALDIEALGEKAAIDLIASGALTDESDLFDL
DEDALLKSSAYTNKEGELNAQGKKLLENLKTARDTDFWRVLVALSIRHVGPIAARALAAR
FGSMEALRAASESELADTDGVGDIIATSFKQWFEVDWHRNIVEKWQAAGVTMEEVATDKP
AQTLEGLNIVVTGTLENFSRDSAKEAIVSRGGKASGSVSKKTDFVVVGANAGSKEAKARD
LGVRIIDEAGFQRLLDTGEA
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgtgactaactctggagcaaaccccgtagacatccaacgccagtggtcggaactc
gcccaagaagtgcgcaagcaccgcgagcagtactacaacgggcagccatcgatcccggat
gccgactttgaccagctctttgccgcgttggtacaacttgaggcgcagcacccggagctg
caaagcccagactcgcccacccagcaagtaggcgcagccccggagggcgctgccgacatc
gaacacctagagcggctctacagtttggacaacgtctttgatgccgctgagctgcaggac
tggttggaccgcaccccggccaaggcctacctgacggagttaaagattgatggtttgtcc
attgacctggtctatcgtgacggccagctggccactgcagctactcgtggcgatgggcga
gtgggtgaggacatcaccgctaatgcccgggtaatcgaggacatcccgcagcacttaact
ggtagcgatgattatccggtgcccgcactagtggaagtacgcggggaggtctacatgcgc
ccggacgatttcgagcagattaacgctgcgcgccgggaggagggcaaacccaccttcgct
aatccgcgcaatgctgccgctggcggcctgcgcatgaaagacccgcaggaggtaaaaaag
cgccgcctgcacatggtctgccacggcttaggcgcccgcgaaggcttcgagcccacgtcg
cagcacgatgcctatgaggcattgtcggcctggggttttccggtaagcccctatacccag
ctcgtccacagcgcgcaggaagtacaagaccgtgtggcttactgggcgcagcaccgccat
gacgcccattttgagatggacggcttagtggtcaaggtggatgatctggccagccagcga
tctttgggagccacgtcgcgggcaccgcgctgggcaattgcctataagtacccgccggaa
gaagtcactactaagttgctcgacatcgaagtcggcgtgggccgcaccggccgggtgacc
ccctatgcagtgatggagccggtatttgtctccgggtccacggtgtccaaggccacgctg
cacaaccaattcgaggtcaagaataaaaatgtgttgattggtgataccgttatcatccgc
aaagccggggagatcattcccgaggtcttgggaccagtgttggacctgcgcgatggtcgt
gagaccgaatgggtctttcccacacactgtccgtcttgcggcacccggcttgccccgcag
aaagagggcgatcaagattggcgctgccccaatacccaaagctgcccggcacagttatca
gcacgcttggagtatctggcctcccgcaaagcactcgacatcgaggcgctgggggagaag
gccgctattgacctcatagcctccggggcattgactgatgagtccgaccttttcgaccta
gatgaagatgcactgctgaagtcctcggcgtacaccaacaaggagggcgaacttaatgcc
cagggcaaaaagctactagaaaacctcaaaaccgcccgggacaccgatttctggcgcgtc
cttgtagccttgtccatccggcatgtgggtcccattgctgcccgtgcactggcagcccgc
tttggctcgatggaggcgctgcgggcggcatcggaaagtgagctggcagataccgatggt
gtcggggacatcatcgcgacgtcgttcaagcaatggtttgaagtggactggcaccgcaac
attgtggagaaatggcaggccgcgggcgtcaccatggaagaggtggccaccgacaaaccc
gcgcaaacccttgagggccttaacatcgtggtcaccgggacgctggagaacttctcccgg
gactcagcaaaagaggcaattgtctcccgcggcggcaaggcctcaggctcggtgtcgaag
aagaccgactttgtggtggtgggggccaacgccggctccaaagaggccaaggcccgcgac
ctgggcgtgcgcatcatcgatgaggcgggattccagcgcctgctggacaccggtgaggcc
taa
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