Clostridium ljungdahlii: CLJU_c36970
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Entry
CLJU_c36970 CDS
T01276
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
clj
Clostridium ljungdahlii
Pathway
clj03030
DNA replication
clj03410
Base excision repair
clj03420
Nucleotide excision repair
clj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLJU_c36970 (ligA)
03410 Base excision repair
CLJU_c36970 (ligA)
03420 Nucleotide excision repair
CLJU_c36970 (ligA)
03430 Mismatch repair
CLJU_c36970 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clj03032
]
CLJU_c36970 (ligA)
03400 DNA repair and recombination proteins [BR:
clj03400
]
CLJU_c36970 (ligA)
Enzymes [BR:
clj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CLJU_c36970 (ligA)
DNA replication proteins [BR:
clj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CLJU_c36970 (ligA)
DNA repair and recombination proteins [BR:
clj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CLJU_c36970 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLJU_c36970 (ligA)
MMR (mismatch excision repair)
DNA ligase
CLJU_c36970 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLJU_c36970 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
BRCT_2
RNA_ligase
HHH
5_3_exonuc
Plasmodium_Vir
RUBY_RBDX
Topo-V_HhH_2_2nd
Glyco_transf_90
DUF4796_N
NagA_C
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ADK16723
UniProt:
D8GTR0
LinkDB
All DBs
Position
complement(4006673..4008667)
Genome browser
AA seq
664 aa
AA seq
DB search
MIYEDRYNELKKIINYHNDRYYNQDNPEVSDYEYDMLMQELKNIEREHPEVITPDSPTQH
VGGNAKRESGVLVRHRVPMLSLRDVFNKEDVEQFVDDVKAQFPDVEFVVETKIDGLSMAL
RYEDGKLITAITRGDGIVYGEDVTVNAKVINDVVKSLKDKIPYLEIRGEVYMTKQAFENV
NEHQELLGKKVFANPRNCAAGTLRQLDSKVTKERNLSLFIFNVQDVRGMEFKTHTEGYEF
LKKQGIKVIENYTVCKTTGEIWDAIERIGENRGDLDYDIDGAVIKINNLAYRTELGSTSK
VPKWAIAYKYPPEEKETKLLDIQLTVGRTGRITPVAIFEPIRLCGTSVSRATLHNQDFID
ELDVGVGDTIVVYKSGEIIPKIKKVIHEKRPEGTVKFQFPDKCPVCGSPVAREEGAADIK
CTNINCPSMLVKRIINFVSRDCMDIKGFGAAYVEQLVDKGYIDDIPDIYHLNEYRDKLVE
EGIIGKEKNTDKLLDAIENSKKNEPQRLLASLGISNVGKSTAKELMKYFKSIDNLINADI
DEIKKVSDIGDISASAIFEYFKNEDNLKIISELAKCGVNMVMNENKEEDNLLEGSKFVIT
GTLPSMGRTEAKELIEKHGGKVSGSVSKKTTYVLAGDAPGSKVTKAQELGVKVISEAELL
QMLK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
ttgatatatgaagataggtataatgaattaaagaaaataattaattatcataatgatagg
tattacaatcaggataatcctgaagtatctgattatgaatatgatatgttaatgcaggaa
ctgaagaatatagaaagagaacatccggaggttatcactccggattctcctactcagcat
gtaggaggtaatgctaagcgtgaatcaggtgtacttgttagacatagagttcctatgtta
agtcttagggatgtttttaacaaagaagacgttgaacaatttgttgatgatgttaaagct
caatttcctgatgtagaatttgtagtggaaacaaaaattgatggtttatcaatggcttta
cgctatgaagatggaaaacttataactgctattactagaggcgatggtattgtctatggt
gaggatgttacagtcaatgctaaagtgataaatgatgtagttaaatcacttaaagataaa
atcccgtatctggagattcgtggagaagtatatatgactaaacaggcctttgaaaatgtt
aatgaacatcaggaactcttgggaaaaaaggtatttgctaatcctagaaactgtgcagca
ggtactcttagacagctggatagtaaagttacaaaagaaagaaatttatctctttttatt
tttaatgttcaggatgttcggggtatggaatttaaaactcataccgaagggtatgaattt
ctaaaaaaacagggtattaaagttattgagaattatacagtatgtaaaactactggtgaa
atatgggatgccattgaaagaattggtgaaaaccgtggagatttagattatgatattgat
ggtgcggttattaaaattaataatttagcatacagaacagagcttggcagtacttctaaa
gttccaaagtgggctattgcttataaatatccacctgaagaaaaagaaactaagcttctt
gatattcaacttacagtaggaaggacaggaaggattacccctgttgctatttttgaacca
ataaggttgtgtggtacaagcgtatcaagagccactctccataatcaagattttattgat
gaattggatgtgggtgttggtgatactatcgtagtatataaatcaggagaaattatccct
aagatcaagaaagttatacacgaaaaacgtcctgaaggaacagttaaatttcagtttcca
gataagtgtcctgtatgcggcagtccagttgctagagaagaaggtgcagctgacattaag
tgcactaatattaattgtccatctatgcttgtaaaaagaattattaattttgtaagcagg
gattgcatggatattaaaggatttggtgcagcttatgttgaacagcttgttgataaagga
tatatagatgatataccggatatttatcatcttaatgaatatagggataagcttgttgaa
gaaggtataatcggaaaagaaaagaatacagataaacttcttgatgccattgaaaattcg
aagaaaaatgagccacagcggctattagcaagtttgggtatatctaatgttggtaagtca
acagctaaagaacttatgaaatattttaaatctattgataatctcattaatgcagatatt
gatgaaatcaagaaagtatctgatattggtgatataagtgcttcagcaatatttgaatat
ttcaaaaatgaagataaccttaaaattataagcgaacttgctaaatgcggtgtaaatatg
gtaatgaacgaaaataaagaagaagataatttacttgaaggcagcaagtttgttattaca
ggaacacttccatcaatgggaagaactgaagcaaaggagcttatagagaaacatggcggc
aaggtatcaggttcggtatctaagaaaaccacatatgtacttgcaggggatgctcctgga
agcaaagtaactaaggctcaggaattaggagttaaggtaatatctgaagcggagttatta
caaatgctcaaataa
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