Campylobacter lari subsp. concheus LMG 11760: CONCH_0682
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Entry
CONCH_0682 CDS
T03557
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cll
Campylobacter lari subsp. concheus LMG 11760
Pathway
cll03030
DNA replication
cll03410
Base excision repair
cll03420
Nucleotide excision repair
cll03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cll00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CONCH_0682 (ligA)
03410 Base excision repair
CONCH_0682 (ligA)
03420 Nucleotide excision repair
CONCH_0682 (ligA)
03430 Mismatch repair
CONCH_0682 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cll03032
]
CONCH_0682 (ligA)
03400 DNA repair and recombination proteins [BR:
cll03400
]
CONCH_0682 (ligA)
Enzymes [BR:
cll01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CONCH_0682 (ligA)
DNA replication proteins [BR:
cll03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CONCH_0682 (ligA)
DNA repair and recombination proteins [BR:
cll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CONCH_0682 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CONCH_0682 (ligA)
MMR (mismatch excision repair)
DNA ligase
CONCH_0682 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CONCH_0682 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
BRCT_2
DNA_ligase_ZBD
NYD-SP28_assoc
HAT1_C
Motif
Other DBs
NCBI-ProteinID:
AJC89097
LinkDB
All DBs
Position
647561..649516
Genome browser
AA seq
651 aa
AA seq
DB search
MTYQEYLEKVKLAKEWMRAYYEDDEPLASDEEYDKLIRELKAFETLHQEKISKDSPTQNI
APIIQSEFHKLAHSAKMWSMEDVFDEAELRAWAKRAKCEFDFFIEPKFDGASLNLTYENG
ILISGATRGDGEVGEDITLNVKEISNIPQKIPYKKKIEIRGEVVILKEDFEKINEKRAKD
GLSLFANPRNAASGSLRQLDTSITRERNLKFYPWGVGENSLEFSKHSEVMEFVRSLGFLK
DDFVFCVKTLDEVLEKYHELLEKRDQKPMMMDGMVVRVDDLAHCKLLGYTVKFPKFMAAF
KFPALEKTTTLLGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEITRLGVMIGD
SVSVIRSGDVIPKITKVFTQRRDGLESQIAKPTLCPECLSELLDEGAFLKCQNLDCKARL
VNSIIHFVSKKCLNIDGLGENIVELLFKEGKITNIESIFFLKYSDFEGLEGFKEKKINNL
LSAIENAKKCSLSRFITALGIEHIGEVAAKKLAQSFGFEWFMQSYEAYSNLEGFGEQMAK
SLEEFTYVNANRIKHFYEILHLEDEKKELIVNDNISNKTFVITGTLSKSRDYFKELIESF
GAKVSSSVSKKTDFVLYGSEVGSKLEKAQSLGVRCINEAEFNALLGGDDEV
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgacttatcaagagtatttagaaaaggtaaaattagcaaaagaatggatgagggcttat
tatgaagatgatgagcctttagcaagcgatgaagaatatgataaacttataagagagtta
aaagcatttgaaacgcttcatcaagaaaagatttctaaagattctcctacgcaaaatatc
gctcctattatacaaagtgaatttcacaaacttgcacatagtgcaaaaatgtggtctatg
gaagatgtttttgatgaagctgagcttagagcttgggcaaaaagagctaaatgtgagttt
gatttttttatagagcctaagtttgatggagcgagtttaaatcttacttatgaaaatggt
attttaatcagtggtgctacaaggggcgatggagaagtaggcgaggatattactttaaat
gtaaaagaaatatcaaatatacctcaaaaaattccttataaaaaaaagatagaaattcgc
ggtgaagtagtgattttaaaagaagattttgaaaaaatcaatgaaaaaagagctaaagat
ggcttgagcttatttgcaaatccacgtaatgcagcaagtggctctttaagacagcttgat
acaagtatcactagagaaagaaatttaaaattttatccttggggagtaggggagaattct
ttagaatttagcaagcactctgaagtgatggagtttgtaagaagtcttggttttttaaaa
gatgattttgttttttgtgtaaaaactttagatgaggttttagaaaaataccacgagctt
ttagaaaaaagagatcaaaagcctatgatgatggatggtatggttgtaagagtagatgat
ttagcccattgtaagcttttgggttataccgtgaaatttccaaaatttatggctgcgttt
aaatttcctgctttggaaaaaactacaaccttactgggggttaatttacaagttggaaga
agtggggtgatcactcctgtggcagtattagaacctgtaaatttagatggggttgtggta
aagtctgcaaccttgcataattttgatgagataactagattgggagtgatgataggcgat
agtgtaagtgtgataagaagcggagatgtcatacccaaaatcactaaagtttttactcaa
aggcgcgatggcttagaaagccaaattgccaaaccaactctttgtcctgagtgtttaagc
gagcttttagatgagggtgcttttttaaaatgtcaaaatttagactgtaaagcaagactt
gtaaattccattatacattttgtatctaaaaagtgtttaaatatagacggccttggagaa
aatattgtagagcttttgtttaaagaaggaaaaatcactaatatagaaagcatatttttc
ttaaaatatagcgattttgaaggcttagaaggctttaaagagaaaaaaatcaacaacctt
ctaagtgccattgaaaatgcaaaaaaatgctctttatcaaggtttatcactgctttgggt
atagagcatattggcgaagtagcagctaaaaagctagcgcaatcttttggctttgaatgg
tttatgcaaagctatgaagcttattcaaatttagaaggttttggcgaacaaatggctaaa
agcttagaagaatttacttatgtcaatgcaaatcgtattaagcatttttatgaaatttta
catttagaggatgagaaaaaagagcttattgtaaatgataatatttctaataaaaccttt
gttatcacaggaactttaagtaaatcacgtgattattttaaagagctaatcgaaagcttt
ggagcgaaagtaagctctagtgtatctaaaaaaacggactttgtattatacggaagcgaa
gtaggctcaaagcttgaaaaggctcaaagtttaggggttagatgtattaatgaagccgag
tttaatgctcttttgggcggtgatgatgaggtttga
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