Campylobacter lari RM16712: UPTC16712_0684
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Entry
UPTC16712_0684 CDS
T03556
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
clm
Campylobacter lari RM16712
Pathway
clm03030
DNA replication
clm03410
Base excision repair
clm03420
Nucleotide excision repair
clm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UPTC16712_0684 (ligA)
03410 Base excision repair
UPTC16712_0684 (ligA)
03420 Nucleotide excision repair
UPTC16712_0684 (ligA)
03430 Mismatch repair
UPTC16712_0684 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clm03032
]
UPTC16712_0684 (ligA)
03400 DNA repair and recombination proteins [BR:
clm03400
]
UPTC16712_0684 (ligA)
Enzymes [BR:
clm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UPTC16712_0684 (ligA)
DNA replication proteins [BR:
clm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UPTC16712_0684 (ligA)
DNA repair and recombination proteins [BR:
clm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UPTC16712_0684 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UPTC16712_0684 (ligA)
MMR (mismatch excision repair)
DNA ligase
UPTC16712_0684 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UPTC16712_0684 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
Nlig-Ia
DNA_ligase_ZBD
HAT1_C
PPP1R21_helical
NYD-SP28_assoc
Motif
Other DBs
NCBI-ProteinID:
AJD06197
LinkDB
All DBs
Position
656154..658109
Genome browser
AA seq
651 aa
AA seq
DB search
MTYQEYLEKVKLAKEWMRAYYEDDEPLASDEEYDKLIRELKAFEMLHQEKISKDSPTQNI
APIIQSEFYKLAHSAKMWSMEDVFDEAELRAWAKRAKCEFNFFIEPKFDGASLNLTYENG
ILISGATRGDGEVGEDITLNVKEISNIPQKIPYKDKIEIRGEVVILKEDFEKINEKRAKD
GLSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENSLKFSKHSEVMEFIRSLGFLK
DDFVFCVKTLDEVLEKYHELLEKRDQKPMMMDGMVVRVDDLAHCKLLGYTVKFPKFMAAF
KFPALEKTTTLLGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARLGVMIGD
SVSVIRSGDVIPKITKVFTQRRDGLESKISKPTLCPECFSELLDEGAFLKCQNLDCKARL
VNSIIHFVSKKCLNIDGLGENIVELLFKEGKITNIESIFFLKYSDFEGLEGFKEKKINNL
LSAIENAKKCSLSRFITALGIEHIGEVAAKKLAQSFGFEWFMQSYEAYANLEGFGEQMAK
SLEEFTHVNANRIKHFYEILHLEDEKKELIINENISNKTFVITGTLSKSRDYFKELIESF
GAKVSSSVSKKTDFVLYGSEAGSKLEKAQSLGVKCINETEFNALLGGADEV
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgacttatcaagagtatttagaaaaggtaaaattagcaaaagaatggatgagggcttat
tatgaagatgatgagcctttagcgagtgatgaagaatacgataaacttataagagagtta
aaagcatttgaaatgcttcatcaagaaaagatttctaaagattctcctacgcaaaatatc
gctcctattatacaaagtgaattttacaaacttgcacatagtgcaaaaatgtggtctatg
gaagatgttttcgatgaagctgaacttagagcttgggcaaaaagagctaaatgtgagttt
aattttttcatagaacctaaatttgatggagcaagtttaaatcttacttatgaaaatggt
attttaatcagcggtgctacaaggggcgatggagaagtaggtgaggatattactttaaat
gtaaaagaaatatctaacatacctcaaaaaattccttataaagacaagatagaaattcgt
ggtgaagtagtgattttaaaagaagattttgaaaaaatcaatgaaaaaagagctaaagat
ggcttaagtttatttgcaaatccacgcaacgcagcaagcggctctttaagacagcttgat
acaagcattacaaaagaaagaaatttaaaattttatccttggggagtgggggagaattct
ttaaaatttagcaagcactctgaagtgatggaatttataagaagtcttggttttttaaaa
gatgattttgttttttgtgtgaaaactttagatgaggttttagaaaaatatcatgagctt
ttagaaaaaagagatcaaaaacctatgatgatggatggtatggttgtaagagttgatgat
ttagctcattgtaagcttttgggttataccgtgaaatttccaaaatttatggccgcattt
aaatttcctgctttggaaaaaactacaaccttgcttggggttaatttacaagttggaaga
agcggagtgattacccctgtggcagtactagagcctgtaaatttagatggggttgtagta
aagtctgcaaccttgcataattttgatgagatagctagacttggagtgatgataggcgat
agtgtaagtgtgataagaagtggcgatgtgataccaaaaatcaccaaagttttcacccaa
agacgtgatggtttagaaagcaaaatatccaaaccaactctttgtcctgagtgttttagt
gagcttttagatgagggtgcttttttaaaatgccaaaacttagactgcaaagcaagactt
gtaaattccattatacattttgtatctaaaaagtgtttaaatatagacggccttggagaa
aatatcgtcgagcttttatttaaagaaggaaaaatcactaatatagaaagtatatttttc
ttaaaatacagtgattttgaaggcttggaaggctttaaagagaaaaaaatcaataatctt
ctaagcgccattgaaaatgcaaaaaaatgctctttatcaaggtttattactgctttgggt
atagagcatatcggagaagtggcagctaaaaagctagcgcaatcttttggctttgaatgg
ttcatgcaaagctatgaagcttatgcaaatttagaaggctttggtgagcaaatggctaaa
agcttagaagaatttacccatgtcaatgcaaatcgtattaaacatttttatgaaattttg
catttagaagatgagaaaaaagagcttattataaatgaaaatatttctaataaaaccttt
gttatcacaggaactttaagcaaatcacgtgattattttaaagagctaatcgaaagcttt
ggagcaaaagtaagctctagtgtgtctaagaaaactgattttgtattatacggaagtgaa
gcaggctcaaagcttgaaaaggctcaaagcttgggggttaagtgtatcaatgaaaccgag
tttaatgctcttttaggcggtgctgatgaggtttga
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