Campylobacter lari NCTC 11845: UPTC3659_0772
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Entry
UPTC3659_0772 CDS
T03552
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cln
Campylobacter lari NCTC 11845
Pathway
cln03030
DNA replication
cln03410
Base excision repair
cln03420
Nucleotide excision repair
cln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UPTC3659_0772 (ligA)
03410 Base excision repair
UPTC3659_0772 (ligA)
03420 Nucleotide excision repair
UPTC3659_0772 (ligA)
03430 Mismatch repair
UPTC3659_0772 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cln03032
]
UPTC3659_0772 (ligA)
03400 DNA repair and recombination proteins [BR:
cln03400
]
UPTC3659_0772 (ligA)
Enzymes [BR:
cln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UPTC3659_0772 (ligA)
DNA replication proteins [BR:
cln03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UPTC3659_0772 (ligA)
DNA repair and recombination proteins [BR:
cln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UPTC3659_0772 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UPTC3659_0772 (ligA)
MMR (mismatch excision repair)
DNA ligase
UPTC3659_0772 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UPTC3659_0772 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
Nlig-Ia
DNA_ligase_ZBD
HAT1_C
PPP1R21_helical
DUF7569
Motif
Other DBs
NCBI-ProteinID:
AJD01620
UniProt:
A0A0A8HXV4
LinkDB
All DBs
Position
738654..740609
Genome browser
AA seq
651 aa
AA seq
DB search
MTYQEYLEKVKLAKEWMRAYYEDDEPLASDEEYDKLIRELKAFETLHQEKISKDSPTQNI
APTIQSEFYKLAHSAKMWSMEDVFDEAELRAWAKRAKCEFNFFIEPKFDGASLNLTYENG
ILISGATRGDGEIGEDITLNVKEISNIPQKIPYKDKIEIRGEVVILKEDFEKINEKRAKD
GLSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLEFSKHSEVMEFVRSLGFLK
DDFVFCVKTLDEVLGKYHELLEKRDQKPMMMDGMVVRVDDLAHCKLLGYTVKFPKFMAAF
KFPALEKTTTLLGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARLGVMIGD
SVSVIRSGDVIPKITKVFTQRRDGLESQITKPTLCPECFSELLDEGAFLKCQNLDCKARL
VNSIIHFVSKKCLNIDGLGGNIVELLFKEGKITNIESIFFLKYSDFEGLEGFKEKKINNL
LSAIENAKKCSLSRFITALGIEHIGEVAAKKLAQSFGFEWFMQSYEAYANLEGFGEQMAK
SLEEFTHVNANRIKHFYEILHLEDEKKELIINENISNKTFVITGTLSKSRDHFKELIESF
GAKVSSSVSKKTDFVLYGSEAGSKLEKAQSLGVKCINEAEFNALLGGADEV
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgacttatcaagagtatttagaaaaggtaaaattagcaaaagaatggatgagggcctat
tatgaagatgatgagcctttggcaagcgatgaagaatacgataaacttataagagagtta
aaagcatttgaaacgcttcatcaagaaaagatttctaaagattctcctacgcaaaatatt
gccccgactatacaaagtgagttttataaacttgcacacagtgcaaaaatgtggtctatg
gaagatgtttttgatgaagctgagcttagagcttgggcaaaaagagctaaatgtgagttt
aattttttcatagaacctaaatttgatggggcgagtttaaatcttacctatgaaaatggt
attttaatcagcggtgctacaagaggcgatggcgaaataggcgaggatattactttaaat
gtaaaagaaatatctaacatacctcaaaaaattccttataaagacaagatagaaattcgt
ggcgaggtagtgattttaaaagaagattttgaaaaaatcaatgaaaaaagagctaaagat
ggcttaagtttatttgcaaacccacgcaacgcagcaagtggctctttaagacagcttgat
acaagcattacaaaagaaagaaatttaaaattttatccttggggagtgggagaaaatact
ttagaatttagcaagcactctgaagtgatggagtttgtaagaagtcttggttttttaaaa
gatgattttgttttttgtgtgaaaactttagatgaggttttaggaaaatatcatgagctt
ttagaaaaaagagatcaaaagcctatgatgatggatggtatggttgtaagggtagatgat
ttagctcattgcaagcttttgggttatacggtaaaatttccaaaatttatggctgcattt
aagtttcctgctttggaaaaaaccacaaccttgcttggggttaatttgcaagttggaaga
agtggggtaatcactcctgtggcagtactagaacctgtaaatttagatggggttgtagta
aagtctgcaaccttgcataattttgatgagatagctagacttggagtgatgataggcgat
agtgtaagcgtgataagaagtggtgatgtgatacctaaaatcactaaagtttttactcaa
aggcgtgatggcttagaaagccaaattaccaaaccaactctttgccctgagtgctttagt
gagcttttggatgagggtgcttttttaaaatgccaaaacttagactgcaaagcaaggctt
gtaaattccattatacattttgtatctaaaaagtgtttaaatatagacggccttggagga
aatatcgtcgagcttttatttaaagaaggaaaaatcactaatatagaaagtatatttttc
ttaaaatacagtgattttgaaggcttagaaggttttaaagagaaaaaaatcaataatctt
ttaagtgctattgaaaatgcaaaaaaatgttctttatcaaggtttatcactgctttaggt
atagagcatattggagaagtggcagctaaaaagctagcacaatcttttggctttgaatgg
tttatgcaaagctatgaagcttatgcgaatttagaaggctttggtgagcaaatggctaaa
agcttagaagaatttacccatgtcaatgcaaatcgcattaaacatttttacgaaatttta
catttagaagatgagaaaaaagagcttattataaatgaaaatatttctaataaaaccttt
gttatcacaggtactttaagcaaatcacgcgatcattttaaagaactaatcgaaagcttt
ggagcaaaggtaagctcaagcgtatctaaaaaaaccgactttgtattatatggaagcgaa
gcaggctcaaagcttgaaaaggctcaaagcttaggagttaaatgtattaatgaagctgag
tttaatgctcttttaggcggtgctgatgaggtttga
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