Clostridium sp. MF28: AXY43_16295 Help Entry AXY43_16295       CDS       T11014                                  Name (GenBank) DNA ligase (NAD(+)) LigA   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism clom  Clostridium sp. MF28 Pathway clom03030   DNA replication clom03410   Base excision repair clom03420   Nucleotide excision repair clom03430   Mismatch repair Brite KEGG Orthology (KO) [BR:clom00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     AXY43_16295    03410 Base excision repair     AXY43_16295    03420 Nucleotide excision repair     AXY43_16295    03430 Mismatch repair     AXY43_16295  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:clom03032]     AXY43_16295    03400 DNA repair and recombination proteins [BR:clom03400]     AXY43_16295 Enzymes [BR:clom01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      AXY43_16295 DNA replication proteins [BR:clom03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      AXY43_16295 DNA repair and recombination proteins [BR:clom03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      AXY43_16295    NER (nucleotide excision repair)     GGR (global genome repair) factors      AXY43_16295    MMR (mismatch excision repair)     DNA ligase      AXY43_16295   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       AXY43_16295 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 PTCB-BRCT DNA_pol_lambd_f HHH Nlig-Ia DNA_ligase_ZBD 5_3_exonuc BRCT_2 RNA_ligase Zn_ribbon_PADR1 SAM_TNK P2_N DUF669 RNA_pol_A_CTD DUF4796_N Motif Other DBs NCBI-ProteinID:  AVK49433 LinkDB All DBs Position 3795739..3797730 Genome browser AA seq 663 aa AA seqDB search MDKIERIKELVEKLNRYSYEYYSLDSPSVSDKDYDEKYYELQELERETGYVLPYSPTLRV GDVVLEGFRKYTHKARLWSLDKAQSLQEIIDWHNRNVKFVEEARGRGENLPDLKYVVTKK FDGLTINLTYNTEGILEIAATRGTGSVGEEVTAQVKTIKSIPLKINSNDILEVHGEAIMT QEAFNKYNETSDTPLKNLRNGAAGALRNLNVKETARRNLSAFFYDVGYKEGTPFKTYMEM MEFIKQQGLPVDDYIRVCTSIEEIEKEINYVRDIRFDLNYDIDGLVIAIDDIRTRELIGY TVKFPKWAIAFKFEAQEATTKLLDVEWNVGRSGRVGPTAILEQVELAGVTVKRATLNNMD DIARKGVRIGAEVFVRRSNDVIPEIMGIVPESLEGSEEITVPEVCPACGSHLVLNGAHYF CENTLSCKPQLVKTIVHYASREAMNIAGFSERTAEQLFEKLNIKSISDLYKLKEEDLIGL EKFAAKKAQNLLEAIEKSKDCELYAFIYALGIPNVGVKTAKDLVSRFKSIEGLKNATFEE LVGVQDVGDIVAQGVMSFFKEEKVLQTIEELLALGVSPKYEEKEVIASAFEGKTVVATGS LKNYSRTEIKDKLESLGAKVAGSVSKKTDYVIAGEAAGSKLTKAEELGVKILSEDEFEEM LRR NT seq 1992 nt NT seq  +upstreamnt  +downstreamnt atggataagattgaaagaataaaagaacttgttgaaaagttaaatagatattcatatgaa tattattctttagatagtccatctgtaagcgacaaggactatgatgaaaaatactacgaa cttcaagaactagaaagagaaacgggatatgtacttccttattcgcctacattaagagtt ggggatgtagtgctagaaggatttaggaagtatacacataaagcaaggctttggagctta gataaagcgcaaagtttgcaagaaattatagattggcataatagaaatgttaagtttgta gaagaggctcggggtagaggagaaaatctgcctgatctaaagtatgttgttacaaagaaa ttcgatgggttaacaattaacttaacatataatactgaaggtatacttgaaatagctgca acaagaggaacaggaagtgtcggtgaagaagttacagcacaggtcaaaacaataaaatca attccacttaaaattaatagcaatgatattttagaagttcatggagaagctattatgacg caagaagcgtttaataaatataatgagacttctgatacaccactaaagaacttaagaaat ggggctgcaggtgctttaagaaacttaaatgtaaaggaaactgcacgaaggaatctttcg gctttcttttatgatgtaggctataaagaaggaactccatttaaaacttatatggaaatg atggagtttataaaacagcaagggctccctgttgatgattatataagggtatgtacgtct atagaagaaattgagaaagagataaattatgtaagagatattagatttgatttaaattat gatatagatggattagtaattgcaatagatgatattagaacaagagaattgataggatat acagtaaagttccctaaatgggcgattgcatttaaatttgaagcccaagaagcaacaact aaacttttagatgttgaatggaatgttggaagaagtggtagagttgggccaacagcaata ttagagcaagtggaacttgcaggcgttactgttaaaagagcgactttaaataatatggat gatattgcgagaaaaggtgttagaattggtgcagaagtatttgtgcgaagaagtaacgat gttataccagagataatggggatagtaccagaatctttagaaggttcagaggaaataaca gttccagaagtttgtcctgcttgtggcagtcatttagtgttaaatggggctcattatttt tgtgaaaacacgctatcttgtaagcctcaattagttaaaactatagttcattatgcttca agagaagcaatgaatatagctggtttttcagaaagaacagcggaacaattatttgaaaaa cttaatattaaatctatttctgatttgtataaactgaaagaagaggatttaataggatta gaaaagtttgcagctaagaaagcacaaaatcttctggaagctatcgaaaaaagtaaagat tgtgagttatacgcatttatatatgctttaggaattccaaatgtaggagtaaagactgca aaagatttagttagcagatttaaatctatagaaggcttgaaaaatgcaacctttgaagaa cttgttggagttcaggatgtcggagatatagttgctcaaggggttatgtctttctttaaa gaggaaaaggtcttacaaacaattgaagaattattagctttaggtgttagtcctaaatat gaagaaaaagaagtaatagcaagtgcttttgaaggaaagactgttgttgcaactggttca cttaagaattattctagaactgagataaaagataaacttgaaagcttaggagcaaaggtt gcaggaagtgttagtaaaaaaacggattatgtaatagcaggggaagctgcaggatccaaa ttaactaaagcagaggaattaggagtaaagatcctttcagaagatgagtttgaagaaatg ctaaggaggtag

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