Clostridium sp. OS1-26: RCG18_04700
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Entry
RCG18_04700 CDS
T11102
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cloo Clostridium sp. OS1-26
Pathway
cloo03030
DNA replication
cloo03410
Base excision repair
cloo03420
Nucleotide excision repair
cloo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cloo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RCG18_04700 (ligA)
03410 Base excision repair
RCG18_04700 (ligA)
03420 Nucleotide excision repair
RCG18_04700 (ligA)
03430 Mismatch repair
RCG18_04700 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cloo03032
]
RCG18_04700 (ligA)
03400 DNA repair and recombination proteins [BR:
cloo03400
]
RCG18_04700 (ligA)
Enzymes [BR:
cloo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RCG18_04700 (ligA)
DNA replication proteins [BR:
cloo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RCG18_04700 (ligA)
DNA repair and recombination proteins [BR:
cloo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RCG18_04700 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RCG18_04700 (ligA)
MMR (mismatch excision repair)
DNA ligase
RCG18_04700 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RCG18_04700 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
HHH
HHH_3
DNA_ligase_ZBD
5_3_exonuc
Nlig-Ia
RNA_pol_A_CTD
RNA_ligase
POLH-Rev1_HhH
BRCT_2
DUF7501
Motif
Other DBs
NCBI-ProteinID:
WML36028
LinkDB
All DBs
Position
complement(916719..918719)
Genome browser
AA seq
666 aa
AA seq
DB search
MSFNSDKIARIKELIEELNKYAHEYYVLDNPSISDKEYDKKYDELTKLEKETGIVLPYSP
TQRIGDGVLAEFQKYTHKGRLWSLDKAQNIQEIKEWHTRNKKAVDEYNSNHEDKLPELKY
VLTKKFDGLTVNCTYDESGILIKAATRGTGEVGEDITAQVKTIKTLPLKINNSSVIEVHG
EAVMTKTAFEEYNKKAETPLKNLRNGAAGALRNLNIKETARRNLSAFFYDVGYNEGTAFR
SYIEMMNFIKEMGFPQDDYLKVCRSIEEIEEELVAVEGIRNTLDYDIDGVVIVVDDMRTR
DILGYTIKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVTPTAILEPVELAGVTVKRAT
LNNMDDIQRKGVKIGCHVFVRRSNDVIPEIMGVVEESLKESNEIEPPTTCPYCGSELVQE
GVHYFCENTLSCKPQMVKSIVHFGSREAMNIEGFSEKTAEQLFEKLQIKSIGDLYRIKKE
DLLTLEKFGDKKAQNLIDAIEKSKSCDLSSFIFALGIPNVGKKTAKDLVKNFKNLGNLKT
ASIDELISVQDIGDIVAKSIIEFFKGDKIIQSINELLQLGVNPRYEEEEISESAFSGKNV
VVTGTLKNYTRSSIKEKLESLGVKITGSVSKKTDYVLAGEEAGSKYDKAIELGVKILSED
DFEKML
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgagttttaatagtgataaaatagcaagaattaaggaactaatagaggaattaaataag
tatgcacatgaatattatgtattagataacccaagtatttcagataaagagtatgataaa
aaatacgatgagttaactaaactagaaaaggaaactggaatcgtacttccttactctccc
acacaaagaataggagatggagtgttagctgagtttcaaaaatacactcataaaggaaga
ttgtggagtttagataaagcacaaaacattcaggaaattaaggaatggcatacaagaaac
aaaaaagcagtagatgaatataattctaaccatgaagataagttgcctgaacttaagtat
gtacttactaaaaaattcgatggacttactgttaactgtacctatgatgaaagtggaata
cttattaaagcagccactagaggaacaggtgaagttggagaagatataacagcacaggta
aaaacaataaaaactcttccattaaaaataaataacagtagtgttatagaagttcatgga
gaggctgttatgacgaagactgcttttgaggaatataataaaaaagctgaaactccacta
aagaacttaagaaatggagctgctggagctttaagaaacttaaacataaaagaaacagcc
agaagaaatttatctgcatttttttacgatgtaggatataacgaaggaacagcatttaga
agttacattgaaatgatgaactttataaaagaaatgggttttccacaagatgattatctt
aaagtgtgcagaagcatagaagagatagaagaagagttagtagctgttgaaggcataaga
aatacattagattatgatatagatggtgttgttatcgttgtagatgacatgagaacaaga
gacatacttggatatactataaaattccctaaatgggcaattgcatataaatttgaagca
gaagaagctactacaaaacttttagatgtagaatggaacgttggtagaagtggaagagta
actcctactgcaatactagagccagtggaattagctggagttactgtcaaaagggccaca
ctaaataatatggatgacatacaaagaaaaggagtaaaaattggttgtcatgtctttgta
cgtcgttctaacgatgtaataccggaaattatgggtgtagttgaggaaagcttaaaagaa
agtaatgaaatagaaccaccaacaacatgtccttactgtggtagtgagttagtgcaggag
ggggtacattatttttgtgaaaatactttatcctgtaaacctcagatggtaaagagtatt
gttcattttggaagtagagaagcaatgaatatagaaggctttagtgaaaagactgcagaa
cagctttttgaaaaacttcagattaaatcaattggcgatttatatagaataaaaaaagaa
gatttacttacattagaaaagtttggggataaaaaggctcaaaatttaattgatgctata
gaaaagagtaaaagttgcgatttatcctcctttatatttgcattgggaatacctaatgta
ggtaaaaaaactgctaaagatttagttaaaaatttcaaaaatttaggtaatcttaaaaca
gcttccatagacgaacttatatctgttcaagatataggagatattgttgctaaaagtata
atagaattcttcaaaggggataaaataatacaaagcataaatgaattactacaattagga
gttaatcctcgttatgaagaagaagaaatatcggaaagcgctttttcagggaaaaacgta
gtagtaacaggtacattgaaaaactatactaggagcagtataaaggaaaaattagagtca
cttggagtaaagattacaggaagtgttagcaaaaagacagactatgttttagctggagaa
gaagcaggatctaaatacgataaggcaatagaattaggtgtaaaaatattaagcgaagat
gattttgaaaaaatgttgtag
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