Chlamydia pneumoniae LPCoLN: CPK_ORF00663
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Entry
CPK_ORF00663 CDS
T01859
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
clp
Chlamydia pneumoniae LPCoLN
Pathway
clp03030
DNA replication
clp03410
Base excision repair
clp03420
Nucleotide excision repair
clp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPK_ORF00663 (ligA)
03410 Base excision repair
CPK_ORF00663 (ligA)
03420 Nucleotide excision repair
CPK_ORF00663 (ligA)
03430 Mismatch repair
CPK_ORF00663 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clp03032
]
CPK_ORF00663 (ligA)
03400 DNA repair and recombination proteins [BR:
clp03400
]
CPK_ORF00663 (ligA)
Enzymes [BR:
clp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CPK_ORF00663 (ligA)
DNA replication proteins [BR:
clp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CPK_ORF00663 (ligA)
DNA repair and recombination proteins [BR:
clp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CPK_ORF00663 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPK_ORF00663 (ligA)
MMR (mismatch excision repair)
DNA ligase
CPK_ORF00663 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPK_ORF00663 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
DNA_ligase_ZBD
HHH_3
PTCB-BRCT
Nlig-Ia
RNA_pol_A_CTD
HHH_8
DUF2157
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ACZ33132
LinkDB
All DBs
Position
complement(657875..659863)
Genome browser
AA seq
662 aa
AA seq
DB search
MKEENSQAHYLALCRELEDHDYSYYVLHRPRISDYEYDMKLRKLLEIERSHPEWKVLWSP
STRLGDRPSGTFSVVSHKEPMLSIANSYSKEELSEFFSRVEKSLGTSPRYTVELKIDGIA
VAIRYEDRVLVQALSRGNGKQGEDITLNIRTIRSLPLRLPEDAPEFIEVRGEVFFSYSTF
QTINEKQQQLEKTIFANPRNAAGGTLKLLSPQEVAKRKLEISIYNLIAPGDNDSHYENLQ
RCLEWGFPVSGKPRLCSTPEEVISVLKTIETERASLPMEIDGAVIKVDSLASQRVLGATG
KHYRWALAYKYAPEEAETLLEDILVQVGRTGVLTPVAKLTPVLLSGSLVSRASLYNEDEI
HRKDIRIGDTVCVAKGGEVIPKVVRVCREKRPEGSEVWNMPEFCPVCHSHVVREEDRVSV
RCVNPECVAGAIEKIRFFVGRGALNIDHLGVKVITKLFELGLVHTCADLFQLTTEDLMQI
PGIRERSARNILESIEQAKHVDLDRFLVALGIPLIGIGVATVLAGHFETLDRVISATFEE
LLSLEGVGEKVAHAIAEYFSDSTHLNEIKKMQDLGVCISPYHKSGSTCFGKAFVITGTLE
GMSRLDAETAIRNCGGKVGSSVSKQTDYLVMGNNPGSKLEKARKLGVSILDQEAFTNLIH
LE
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagagaattcacaagcacactacttagctttatgtcgtgaattagaagaccat
gattattcttattatgtgttgcatcgtcctagaatctctgattatgaatatgacatgaaa
ttacggaagcttcttgaaatagagagaagtcatcccgaatggaaagtcttatggtctccc
tcaacacgtctcggagatcgtccctctggaactttttctgtggtttcccataaggaaccg
atgctttccattgccaatagctattctaaagaagaattaagtgagtttttttctagggta
gaaaaatccctaggtacaagtccacgttatacagtagaacttaaaatcgatgggattgca
gtagcaatacgttatgaagatcgtgtgttggttcaagcactcagccgaggaaatggaaag
cagggagaggatatcacattgaatattcgaacaatacgctccttgcctttaagacttcca
gaagatgctccagagtttattgaagtacgtggcgaggtcttcttctcttattctacgttt
caaactatcaatgagaagcagcaacaattagagaaaactatttttgccaacccgagaaat
gctgcaggaggtaccttaaagttactttctcctcaagaagtcgcaaaacgtaaattagaa
atttctatctataatctcattgctccaggagataacgattctcattatgaaaatcttcag
cgctgccttgaatggggatttcctgtatctggtaaaccaagattgtgctctaccccagag
gaagtgatctcagttttaaagactatagaaactgagagagcttccttgcctatggaaatc
gatggtgctgtcatcaaggtagacagtttggcaagtcagagagttcttggagccacaggg
aaacactatagatgggccttagcttataaatatgccccagaggaagcagagacccttctt
gaggatattctagttcaagtaggaagaacgggagttctgactcctgtagctaaactcact
cctgtactgttgtcagggtctttagtatctagagcgtctctatacaatgaagatgagatt
catagaaaagacatccgtattggtgataccgtttgtgttgctaaaggtggagaggtgatt
ccaaaagtagttcgggtatgcagagaaaaacgtcctgaaggttctgaagtttggaatatg
cctgaattctgccctgtctgccatagtcacgtagttcgggaagaagatagagtttctgtg
cgttgtgtcaatcctgagtgtgttgcaggagctattgaaaaaattcgtttttttgttggt
cggggagctttaaatatcgatcatttaggggtgaaggtaatcacaaagctgtttgaatta
gggttagtgcacacgtgtgcggacctatttcagctgactactgaagatttaatgcaaatt
cccgggatacgggaacgctctgcaagaaatattctagagagtatcgagcaagctaaacat
gtggatctagatcgttttcttgttgctctggggattcctctcattggaattggtgttgct
actgtactagctggccacttcgagactttagatcgggtaatttccgcgacttttgaagaa
cttctttcactagagggtgttggagagaaggtggctcatgctattgctgagtatttttca
gactctacgcatcttaacgaaatcaagaaaatgcaggatttaggagtgtgtatatctcct
tatcataaatcaggatctacgtgttttggcaaggcttttgtgatcacagggacgttagag
ggaatgtctcggttagatgcagaaactgctatccggaattgtgggggtaaggtaggctcc
tctgtctcgaaacagaccgattacttagttatggggaataacccaggatctaaattagag
aaggctaggaaattgggagtctctatcttagatcaagaagcctttacaaatctaattcat
ttagaataa
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