Campylobacter lari RM16701: UPTC16701_0679
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Entry
UPTC16701_0679 CDS
T03550
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
clr
Campylobacter lari RM16701
Pathway
clr03030
DNA replication
clr03410
Base excision repair
clr03420
Nucleotide excision repair
clr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UPTC16701_0679 (ligA)
03410 Base excision repair
UPTC16701_0679 (ligA)
03420 Nucleotide excision repair
UPTC16701_0679 (ligA)
03430 Mismatch repair
UPTC16701_0679 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clr03032
]
UPTC16701_0679 (ligA)
03400 DNA repair and recombination proteins [BR:
clr03400
]
UPTC16701_0679 (ligA)
Enzymes [BR:
clr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UPTC16701_0679 (ligA)
DNA replication proteins [BR:
clr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UPTC16701_0679 (ligA)
DNA repair and recombination proteins [BR:
clr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UPTC16701_0679 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UPTC16701_0679 (ligA)
MMR (mismatch excision repair)
DNA ligase
UPTC16701_0679 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UPTC16701_0679 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
BRCT_2
Nlig-Ia
DNA_ligase_ZBD
HAT1_C
NYD-SP28_assoc
PPP1R21_helical
Motif
Other DBs
NCBI-ProteinID:
AJD04719
LinkDB
All DBs
Position
649886..651841
Genome browser
AA seq
651 aa
AA seq
DB search
MTYQEYLEKVKLAKEWMRAYYEDDEPLASDEEYDKLIRELKAFETLHQEKISKDSPTQNI
APTIQSEFHKLAHSAKMWSMEDVFDEAELRAWAKRAKCEFDFFIEPKFDGASLNLTYENG
ILISGATRGDGEIGEDITLNVKEISNIPQKIPYKDKIEIRGEVVILKEDFEKINEKRAKD
GLSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENSLEFSKHSEVMEFVRSLGFLK
DDFVFCVKTLDEVLEKYHELLEKRDQKPMMMDGMVVRVDDLAHCKLLGYTVKFPKFMAAF
KFPALEKTTTLLGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARLGVMIGD
SVSVIRSGDVIPKITKVFTQRRDGLESKITKPTLCPECFSELLDEGAFLKCQNLDCKARL
VNSIIHFVSKKCLNIDGLGENIVELLFKEGKITNIESIFFLKYSDFEGLEGFKEKKINNL
LSAIENAKKCSLSRFITALGIEHIGEVAAKKLAQFFGFEWFMQSYEAYANLEGFGEQMAK
SLEEFTHVNANRIKHFYEILHLEDEKKELIINDNISNKTFVITGTLSKSRDHFKELIESF
GAKVSSSVSKKTDFVLYGSEAGSKLEKAQSLGVKCINEAEFNALLGGADEV
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgacttatcaagagtatttagaaaaggtaaaattagcaaaagaatggatgagggcttat
tatgaagatgatgagcctttagcaagcgatgaagaatacgataaacttataagagagtta
aaagcatttgaaacgcttcatcaagaaaagatttctaaagattctcctacgcaaaatatc
gccccgactatacaaagtgagtttcataaacttgcacatagtgcaaaaatgtggtctatg
gaagatgtttttgatgaagctgaacttagagcttgggcaaaaagagctaaatgtgagttt
gattttttcatagagcctaagtttgatggagcgagtttaaatcttacttatgaaaatggt
attttaatcagcggtgctacaaggggcgatggagaaataggcgaggatattactttaaat
gtaaaagaaatatcaaacatacctcaaaaaattccttataaagacaagatagaaattcgt
ggcgaagtggtaattttaaaagaagattttgaaaaaattaatgaaaaaagagctaaagat
ggcttaagtttatttgcaaatccacgcaacgcagcaagcggctctttaagacagcttgat
acaagcattacaaaagaaagaaatttaaaattttatccttggggagtgggggagaattct
ttagaatttagcaaacactctgaagtgatggagtttgtaagaagtcttggttttttaaaa
gatgactttgttttttgtgtgaaaactttagatgaggttttagaaaaatatcatgagctt
ttagaaaaaagagatcaaaaacctatgatgatggatggtatggttgtaagggtagatgat
ttagctcattgtaagcttttgggttatactgtgaaatttccaaaatttatggctgcattt
aaatttcctgctttagaaaaaactacaaccttgcttggggttaatttacaagttggaaga
agcggagtgatcactcctgtggcagtgctagaacctgtaaatttagatggggttgtagta
aagtctgcaaccttgcataattttgatgagatagctagacttggagtgatgataggcgat
agtgtaagtgtgataagaagtggcgatgtgatacctaaaatcactaaagtttttacccaa
aggcgtgatggtttagaaagtaagattaccaaaccaactctttgtcctgagtgttttagt
gagcttttggatgagggtgcttttttaaaatgccaaaacttagactgcaaggcaagactt
gtaaattccattatacattttgtatctaaaaagtgtttaaatatagacggccttggagaa
aatatcgtcgagcttttatttaaagaaggaaaaatcactaatatagaaagtatatttttc
ttaaaatacagcgattttgaaggcttggaaggctttaaagagaaaaaaatcaacaatctt
ctaagcgccattgaaaatgcaaaaaaatgctctttatcaaggtttattactgctttgggt
atagagcatatcggagaagtggcagctaaaaagctagcacaattttttggctttgaatgg
tttatgcaaagctatgaagcttatgcgaatttagaaggctttggtgagcaaatggctaaa
agcttagaagaatttacccatgtcaatgcaaatcgtattaaacatttttacgaaatttta
catttagaagatgagaaaaaagagcttattataaatgataatatttctaataaaaccttt
gttatcacaggtactttaagcaaatcacgcgatcattttaaagaactaatcgaaagcttt
ggagcaaaagtaagttcaagtgtatctaaaaaaaccgactttgtattatatggaagcgaa
gcaggctcaaagcttgaaaaggctcaaagcttaggagttaaatgtattaatgaagctgag
tttaatgctcttttaggcggtgctgatgaggtttga
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