Corynebacterium lujinxingii: IAU68_05050
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Entry
IAU68_05050 CDS
T07743
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cluj
Corynebacterium lujinxingii
Pathway
cluj03030
DNA replication
cluj03410
Base excision repair
cluj03420
Nucleotide excision repair
cluj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cluj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IAU68_05050 (ligA)
03410 Base excision repair
IAU68_05050 (ligA)
03420 Nucleotide excision repair
IAU68_05050 (ligA)
03430 Mismatch repair
IAU68_05050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cluj03032
]
IAU68_05050 (ligA)
03400 DNA repair and recombination proteins [BR:
cluj03400
]
IAU68_05050 (ligA)
Enzymes [BR:
cluj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IAU68_05050 (ligA)
DNA replication proteins [BR:
cluj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IAU68_05050 (ligA)
DNA repair and recombination proteins [BR:
cluj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IAU68_05050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IAU68_05050 (ligA)
MMR (mismatch excision repair)
DNA ligase
IAU68_05050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IAU68_05050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HMBD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QNP91128
UniProt:
A0A7H0K1G2
LinkDB
All DBs
Position
1011470..1013497
Genome browser
AA seq
675 aa
AA seq
DB search
MSEISADLHREWDELAAEVRKHRDLYYNGQPVITDGEFDELFRRLQQLEEDHPELAVPDS
PTKQVGAPATDTAFADVRHPERMMSLDNVFNEDEMREWLVKAPGPYLTELKIDGLSIDLV
YENGELTRAATRGDGTTGEDITANARVIEDIPHRLTGDAPAFLEVRGEVFIRPEDFPELN
ELRQQEGGKPFANPRNTAAGGLRQKNPEDVKKRKLRMICHGIGAREGFTPKTQHEAYEKL
AEWGLPVSEYTRRAETADEVIEAVNYWGEHRNDAIHEMDGLVVKVDSVSEQRQLGATSRA
PRWAIAYKYPPQEVTTKLNDIEVSVGRTGRATPFAVLEPVFVSGSTVSMATLHNQHEVER
KGVMIGDTVVVRKAGEIIPEVLGPVADLRDGTEREFVYPENCPVCGTKLAPAKEGDADWR
CPNTRSCPAQLSARLEYIASRGVFDIEALGEKGAQDLIASGVLVDEAALFDLTEDDLKKS
SVYTRKDGQVNAAGKKLLANLETAKDADLWRVLTGLSIRHVGPTAARALASRFHSVQALI
DAPVADLAETDGVGQIIAESFKDWFTVDWHRAIVDSWAAAGVTMESSEEDRAPQTLEGLT
IVATGTLEGFTRDEIKEAILSRGGKAAGSVSKKTDYVVVGENAGSKATKAEELGRPILNE
AQFVQLLEGGPDALA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaaatttccgctgatctgcaccgcgaatgggacgaactggccgccgaggtacgc
aagcaccgcgacctgtattacaacggccagccggtcatcactgacggcgagttcgacgag
ctgttccgccgcctccaacaactggaggaggaccacccggagttagccgtgccggactcg
ccgacgaagcaggttggcgcgcccgccaccgacaccgcgttcgcggacgtgcgccacccc
gagcgcatgatgagcctggacaacgtttttaacgaagacgagatgcgcgagtggctcgtc
aaggcgccgggaccgtacctgacagaactgaagatcgatgggctatccatcgacctggtc
tacgaaaacggcgaactcacccgcgcggccacgcgtggcgacggcaccactggcgaggac
atcaccgccaacgcgcgcgtgatcgaggacatcccgcaccggctcaccggcgacgcgccc
gcgttcctcgaggtccgcggcgaggtgttcatccgtcccgaggacttcccggaactcaac
gagctgcgccaacaagaaggcggcaaaccgttcgccaacccgcgcaacaccgccgccggc
ggcttgcgccagaagaacccggaggacgtgaaaaagcgcaaactgcgcatgatctgccat
ggcatcggcgcgcgcgagggcttcaccccgaaaacccagcacgaggcttacgagaagctc
gccgagtgggggctgccggtctccgagtacacgcgccgggccgagaccgccgacgaggtg
atcgaggccgtcaactactggggcgagcaccgcaacgatgcgatccatgagatggacggg
cttgtggtcaaggtcgatagcgtctccgagcagcgccaactcggcgccacctcacgcgcg
ccgcgctgggccatcgcgtacaagtatccgccgcaggaagtgacgacgaaactcaacgac
atcgaggtctccgtcggacgcacgggacgtgcgaccccgttcgcggtgctcgagccggtg
ttcgtctccggctccacggtgtccatggccacgctgcacaaccagcatgaggtcgaacgc
aagggtgtgatgatcggcgacaccgtcgtggtgcgcaaggccggagagatcatcccggag
gtgttgggcccggtcgcggatcttcgcgacggcaccgagcgcgagttcgtctaccccgaa
aactgccccgtctgcggcaccaaactcgcccccgcgaaggagggcgacgcggattggcgc
tgcccgaacacccgctcgtgcccggcgcaactgtcggccaggctcgagtacatcgcttca
cgcggcgtgttcgacatcgaggcgctcggtgagaagggcgcgcaggatctcatcgcctcg
ggtgtgcttgtcgacgaagccgcgctgtttgacctcaccgaagacgacctgaagaaatcc
agcgtgtacacccgcaaggacggccaggtcaacgccgccggtaagaagttgctcgccaac
ctggagaccgcgaaggacgccgacctgtggcgtgtgctcacgggcctgtcgatccgccac
gtcggcccgaccgccgcgcgagcgctcgcctcgcgcttccactcggtgcaggcgcttatc
gacgcccccgtggccgatctcgccgaaaccgacggcgtcggccagatcatcgccgagagc
ttcaaggattggttcacggtggattggcaccgggcgatcgtcgatagctgggcggccgcc
ggtgtgaccatggaatcgagcgaggaggatcgcgcgccgcaaacgctggaggggctgacc
atcgtcgccacgggcacgctcgagggcttcacccgcgacgagatcaaggaggccatcctg
tcgcgcggcggcaaggcggcgggctcggtgtcgaagaaaaccgactacgtggtggtgggc
gaaaacgccggctccaaggccaccaaggcggaggaactgggtcggccgatcctcaacgaa
gcgcagtttgtgcagctgctcgagggcggcccagacgcgcttgcctaa
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integrated database retrieval system
