Cyclopterus lumpus (lumpfish): 117725477 Help Entry 117725477         CDS       T09199                                  Name (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism clum  Cyclopterus lumpus (lumpfish) Pathway clum04115   p53 signaling pathway clum04145   Phagosome clum04148   Efferocytosis clum04350   TGF-beta signaling pathway clum04510   Focal adhesion clum04512   ECM-receptor interaction clum04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:clum00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     117725477   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     117725477  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     117725477    04148 Efferocytosis     117725477   09143 Cell growth and death    04115 p53 signaling pathway     117725477   09144 Cellular community - eukaryotes    04510 Focal adhesion     117725477   09142 Cell motility    04820 Cytoskeleton in muscle cells     117725477  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:clum04131]     117725477   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:clum00536]     117725477 Membrane trafficking [BR:clum04131]  Endocytosis   Phagocytosis    Opsonins     117725477 Glycosaminoglycan binding proteins [BR:clum00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    117725477 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 EGF_CA TSP1_ADAMTS cEGF TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  117725477 NCBI-ProteinID:  XP_034381559 Ensembl:  ENSCLMG00005010362 LinkDB All DBs Position 22:9757015..9765428 Genome browser AA seq 1183 aa AA seqDB search MFTGDFLFKASGTMMPCAIFLLLMLWSCEGARLAESRDDNGVFDLFDLARVNKRHNGVSL VKGADPYSPAYKVLNADLIPPLPDTHLRDLLDSIQAERGFLLLVNLKQFKKTRGTLLTIE KNDGSGPVFEIISNGKANTLDVVYSTMNQQQVVSIEDADLATGHWKNITLFVQDDRVQLF VGCEEINVSEMDLPISKVLSQEVADVARLRIGKGAVRDKFMGVLQNVRFVFGTTLDAILR NKGCQSGATLTDVMTLQNPVNGSSSAIRTDYTGHKAKDLPSVCGFSCEDIAGMFKELKGL GVVVKQLSNELRKVSEDSTLLKKQINIHSGICIHNGIVHKDKDEWTVDSCTECTCQNSAT VCRKISCPLISCANATMPDGECCPRCERHYIEDGWSPWSDWTHCSVTCGRGIQQRGRSCD RINSNCEGTSVQTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTP QMGGRDCQGEGRQTEICQMSPCPINGGWGPWSPWDTCTVTCDGGVQTRKRLCSDPVPKYG GKDCVGDASVSQVCNKQDCPIDGCLSSPCFRGAKCNSFPDGSFKCGRCPLGYTGNGIACK DIDECKEVPDACHTHNGVHRCENTEPGYNCLPCPARFSGPQPFGRGVEQATAKKQVCKPR NPCQDGSHDCHRNSNCIYLGVFSESMFRCECKPGYAGNGRICGEDSDLDGWPNTNLHCVE NATYHCKKDNCPNLPNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPRVYNPAQYDSDR DDVGDSCDNCVFEANTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRD GVGDHCDNCPLEHNPDQFDSDSDLIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQVDHDK DGKGDACDHDDDNDGIPDDKDNCRLAFNPDQLDSDGNGRGDVCKDDFDQDSILDIYDVCP ENFDISETDFRRFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFSAVD FSGTFFVNTDRDDDYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVN STTGPGEHLRNALWHTGDTAGQVQTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYE GKRIMADSGNIFDKTYAGGRLGLYVFSQEMVYFSDLKYECRDT NT seq 3552 nt NT seq  +upstreamnt  +downstreamnt atgttcacaggggattttctttttaaagcatcagggaccatgatgccgtgtgccatcttt ttactgttgatgctttggagctgtgaaggagcaagattggcagagagtcgggacgataac ggtgtgtttgacttatttgatctggctcgggtaaacaagagacacaacggagtgagtttg gtcaaaggtgcagatccttacagccctgcatacaaggtcctcaacgcagacctgatcccc ccactccccgacacacacctcagggacctccttgactccatccaggctgagaggggcttc ctcctccttgtcaacctgaagcagttcaagaaaaccaggggcacccttttgaccatcgag aagaatgacggatccggacccgttttcgagatcatctccaacgggaaggcgaacactctg gacgtggtctactccaccatgaaccagcagcaggtcgtgtccatcgaggatgctgatttg gccactggacactggaagaacatcacgctgttcgttcaggatgaccgggtgcagcttttt gtcggctgtgaggagatcaatgtttcagagatggatttgccaatctccaaagtgctgtcc caggaggtggcagacgttgcccggctcaggattggaaagggagccgtaagggacaaattc atgggagtgcttcaaaatgtgcgctttgtctttgggaccacgcttgatgctatactgaga aataagggatgccagagtggagctaccttaactgatgtcatgaccctgcagaatccagtc aatggctccagctcggccattaggactgattacactggtcacaaagccaaagatctgccg tctgtttgcggtttctcttgtgaggacattgccggcatgtttaaggagctcaagggactc ggcgttgtcgttaaacagctgtcgaacgagctccgcaaagtgtctgaggacagcacactg ctgaaaaagcaaattaacatccacagtggaatttgcatccacaatggcattgtgcacaag gacaaagatgaatggaccgtggatagctgcacagagtgcacctgccagaactctgctacc gtgtgtcgcaaaatctcctgccctctgatctcatgtgccaacgccaccatgccagatgga gagtgctgccctcgctgtgaaagacactacatagaggatggttggtccccctggtctgac tggacccattgttcggtgacttgtggacggggcatccagcagcgcggacgctcctgtgac cgcatcaacagcaactgtgagggcacctctgtccagacccgtgactgctacccccaggaa tgtgacaaacgtttcaaacaggacggcggttggagccactggtctccctggtcttcgtgc tctgtgacctgcggtgagggcgtcatcacccggatacgcctatgcaactcccccacaccg cagatgggtggcagggactgccagggagaaggacggcaaacggaaatctgccaaatgtca ccctgtcctatcaatggaggttggggaccttggtcaccatgggacacctgcactgttacc tgtgatggaggagtccaaacccgcaaacgcctctgctccgaccctgtccccaaatatgga ggaaaggattgtgttggtgatgcttctgtgtctcaagtgtgcaacaaacaggactgccct attgatggttgtctctccagcccatgcttccgtggagcaaagtgcaacagcttccccgat ggctctttcaagtgcggcaggtgtccacttggctacactgggaacggcattgcctgcaaa gacattgatgaatgtaaagaggtccccgatgcgtgccacacacacaacggagtccatcgc tgtgagaacactgagcccggttacaactgtctgccctgccctgcacgtttctctggtcct cagccctttggaagaggagtggaacaggcgactgctaaaaaacaggtttgcaaaccccgt aacccttgccaagatgggagccacgactgccataggaattcaaactgcatctacttgggc gtcttctccgagtccatgtttcgctgcgagtgcaagccagggtatgctgggaatggccgt atttgcggagaggacagtgacctggacggatggcccaacactaacctgcattgtgtggag aacgccacctaccactgcaagaaggataactgccccaaccttcccaactctggccaggaa gatcatgacaaagatggcctgggtgatgaatgtgaccatgatgatgacaatgatgggata cccgatgatagggacaactgcccaagagtgtacaaccctgcccagtatgactcagacaga gatgacgttggcgacagctgtgacaactgtgtgttcgaggccaacacagaccaaacggac actgacaacaatggcgagggtgatgcctgtgctgttgacattgatggtgatggcattctg aacgagaacgacaactgcccttatgtttacaacgtggaccagagagataccgacagggac ggggtgggagatcattgtgacaactgccccctggagcacaaccccgatcagtttgactct gactcagatctcatcggagacaagtgcgacaacaaccaggacattgatgaggacggccac cagaacaacttggacaactgcccctacatacccaacgccaaccaggtagaccacgacaag gatggcaagggtgacgcctgcgaccatgacgatgacaacgacggcattcccgatgacaag gacaactgtaggctggcgtttaaccctgatcagctggactctgatggcaatggccgtggt gatgtgtgcaaagacgattttgaccaagacagtattctggacatctatgacgtgtgcccg gagaactttgacatcagtgaaacagacttccgcagattccaaatggttcctctggacccc aagggcacctcccagattgaccccaactgggtagtccggcatcagggcaaggagttggtg cagactgtcaactgcgatcctggcattgctgttggttacgatgagttcagcgcagtggat ttcagtggaacgttcttcgtcaacacggacagagatgacgactacgctggtttcgtattt ggctaccagtccagctcacgcttctacacagtgatgtggaaacagatcacacagacctac tggtcccacacacctacaagagctcaaggctactcaggcctgtcaattaaagtggtcaac tccaccactggacccggcgagcatttgaggaacgccctgtggcacacaggagacaccgca ggacaggtacaaactctgtggcacgaccccaagaacattggctggaaggatttcactgcc tacagatggcatctgacccacagacccaagactggacttattagagtggtcatgtatgaa ggcaagagaatcatggctgattctggaaacatctttgacaagacgtacgctggcgggcgg ctaggcttgtacgtcttctctcaggagatggtttacttctcagaccttaaatacgaatgc agagatacataa

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