Cyclopterus lumpus (lumpfish): 117727098 Help Entry 117727098         CDS       T09199                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism clum  Cyclopterus lumpus (lumpfish) Pathway clum04115   p53 signaling pathway clum04145   Phagosome clum04148   Efferocytosis clum04350   TGF-beta signaling pathway clum04510   Focal adhesion clum04512   ECM-receptor interaction clum04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:clum00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     117727098 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     117727098 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     117727098 (thbs1b)    04148 Efferocytosis     117727098 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     117727098 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     117727098 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     117727098 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:clum04131]     117727098 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:clum00536]     117727098 (thbs1b) Membrane trafficking [BR:clum04131]  Endocytosis   Phagocytosis    Opsonins     117727098 (thbs1b) Glycosaminoglycan binding proteins [BR:clum00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    117727098 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 Laminin_G_3 TSP1_ADAMTS cEGF EGF TSP1_CCN Motif Other DBs NCBI-GeneID:  117727098 NCBI-ProteinID:  XP_034383028 Ensembl:  ENSCLMG00005022684 LinkDB All DBs Position 24:complement(15156105..15168000) Genome browser AA seq 1165 aa AA seqDB search MKLTGIFLLLMLWTCESARVAESRDDNSVFDLFEHVKVSKKNHGVTLVKGDDPYSPAYKI LDPDLIPPVSESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKKDGSGPVFEIVS NGKANTLDIVFSTENKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYAGCEEVNTAELDA PIQSILTLETPDSAQLRIGKGAVRDRFMGVLQNVRFVFGASLEAVLRNKGCQTSMTTDSM ILENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLVSMFKELKGLGVVVKELSSELRQMTD ENKLIKNRIGVCLHNGIVHKNRDEWTVDDCTECTCQNSATVCRKISCSLINCANATVPDG ECCPRCGTPSDYAEDSWSLWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTRDCYL QECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKNCEGEGRQTEKCQ KSPCPINGNWGPWSPWDTCTLTCGSGNQTRKRMCNDPAAKYGGKECVGNAKDIQMCNKKA CPIDGCLSNPCFAGAKCTSFPDGSWKCGKCPAGYTGNGIKCKDVDECKEVPDACFEFNGV HRCENTDPGYNCLPCPSRYSGPQPFGKGLEQAAAKKQVCTPRNPCLDGSHDCNKNARCNY LGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNFDLVCVANATYHCKKDNCPNLPNSG QEDYDKDGVGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNSNPDQ TDTDSNGEGDACAVDIDGDGILNEKDNCPYVYNVDQKDTDLDGVGDMCDNCPLEHNPDQV DSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDNDGIPD DKDNCRLAFNPDQLDADGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRQFQMVPL DPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDDYAGF VFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALWHTGN TPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGSIYDKTYAG GRLGLFVFSQEMVYFSDLKYECRDV NT seq 3498 nt NT seq  +upstreamnt  +downstreamnt atgaagttgacaggaatatttttgctattgatgctttggacctgcgagagtgcgcgagtc gcagagagccgggacgacaatagcgtgtttgacttgttcgagcacgtcaaagtctcgaag aagaaccacggggtcaccctggtgaaaggagacgacccgtacagccccgcctacaagatc ctcgacccggacctgatccccccggtctccgagagcgcctttcgggacctgatcgattcc atccacgccgagaggggtttcctcctgctgctcaacttcaagcagttcaagcggacccgg ggcagcctcctgaccgtggagaagaaggacggttccggacccgtgtttgagatcgtctcc aacggcaaggcgaacaccttggacatcgttttctccaccgagaacaagcagcaggtggtt tccattgaagatgtggatctggctacgggccactggaagaatatcacgctgttcgtgcag gaggaccgggcgcagctgtacgcgggatgcgaggaggtgaacaccgccgagctggatgcg cccatccagagcatcctgacgctggagaccccggacagcgcgcagctccggattggcaaa ggagccgtgagggacaggttcatgggggtcctccaaaacgtgaggtttgtgtttggagca tcactggaggccgtcctccgcaacaaaggatgccaaacctccatgacgactgactccatg atcctggagaacctcaatggctcctcagccatcagaacagaatacactggacacaagact aaagacctgcagatggtctgtggcttctcctgcgaggacctggtcagcatgtttaaggag ctgaagggcctcggtgtggtggtcaaggagctgtccagtgagctccgccagatgacggat gagaacaagctgattaagaaccgcatcggcgtctgcctccacaacggcatcgtgcacaag aaccgagacgaatggaccgtcgacgactgtaccgagtgcacttgtcagaactctgctact gtgtgccgcaagatctcctgctccctgatcaactgcgctaatgctactgttcccgatgga gagtgctgcccacgctgtggaacaccgagcgactatgcagaagacagctggtcgctgtgg tctgaatggacccattgttccgtgtcgtgtgggcggggcatccagcagcgcgggcgctct tgcgaccgtatcaataacaactgcgagggcacctctgtgcagacccgcgactgctacctc caggagtgtgacaagcgattcaagcaggatggcagctggagccactggtcaccctggtcc tcctgctctgtcacctgtggtgctggtgtcataacccgtatccgcctctgcaactccccc acccctcagcttggaggcaagaactgtgagggagagggccggcaaaccgagaagtgtcag aaatctccgtgccccatcaatggcaactggggaccctggtcaccatgggatacctgcact ctcacctgtggaagtggtaaccaaactcgtaaacgcatgtgcaatgaccccgcagccaaa tacggtggcaaagagtgtgttggtaatgccaaagacatccagatgtgcaacaagaaagcc tgtcccattgatgggtgcctgtctaacccctgctttgctggagccaagtgcaccagtttc cctgatggctcctggaagtgtgggaagtgtccggctggctacactggcaatgggatcaag tgtaaagatgtagatgagtgcaaggaggtcccagatgcttgctttgagttcaatggtgtg caccgctgtgagaacaccgatccgggctacaactgtctgccctgcccttctcgctactca ggaccccaaccgtttggcaaaggtttggagcaggccgcggctaagaaacaggtgtgcacg cctcgtaacccctgcctcgatggaagccacgactgcaacaaaaacgcccgctgtaactac ctcgggcactttgccgatcccatgtaccgctgcgagtgcaaaccaggctacgctggcaac ggacatatctgtggagaagacacagatctggatggatggcccaattttgacttggtgtgt gtggcaaacgccacctaccactgcaaaaaggacaactgtcccaacctccccaactctggg caggaagattacgataaggacggcgttggagatgcttgtgacaacgatgatgacaatgat ggcattcctgatgatagggacaactgtccattcgtctacaaccccaggcagtatgactac gaccgcgatgacgtgggtgaccgctgtgataactgcccctacaatagtaacccagaccaa acggacacagacagtaatggagagggagacgcctgcgctgtggacattgatggagatggc atactgaatgaaaaggacaactgcccctatgtgtacaatgtggaccagaaagacacagat ctggatggagtgggagacatgtgcgataactgcccgctggaacataatcctgatcaggtg gattcagacgatgaccgtgtgggagacaagtgtgacagcaaccaggacatcgatgaagac ggacaccagaacaacctggacaactgcccgtacatcccgaatgccaatcaggctgaccac gacaaggacggcaagggagacgcctgtgaccacgatgacgacaatgatggcattcccgac gacaaggacaactgcagactggccttcaaccctgaccagctggatgctgatggtgatggc cgtggagatgcttgcaaagacgactttgaccaagacaacgtgcctgacatctacgacgtg tgcccagagaacttcgacattagtgagacagacttccgccagttccagatggttcctctt gaccctaaaggcacctcgcagattgatcctaactgggtcgtccgccatcagggcaaagag ctggtacagactgtcaactgcgaccctggcatcgctgttggttaccacgagttcaattca gtggacttcagtgggactttcttcattaacacagagagggacgacgattacgccggcttt gtgttcggctatcagtccagttccaggttctatgtggtgatgtggaagcagattacgcag acatactggtcgaacaaacccaccaaggcccagggctactcaggcctgtccattaaagtg gttaactccaccaccggcccaggagagcacctcaggaacgccctctggcatacaggaaat accccaggacaggtccgcactctctggcatgaccctaagaatgttggatggaaagacttc accgcctacagatggcatctgatccacagaccgagaacaggactcattagagttgtgatg tacgagggcaagaagatcatggcagattctggaagcatctatgacaagacatatgccggc ggcagactcggtctttttgtcttctcacaagagatggtatacttctcagacctcaagtat gaatgcagagatgtttaa

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